FC868526

Overview
NameFC868526
Unique NameFC868526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6394 contig Ccv1_Contig6394:585..1309. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868526 vs. ExPASy Swiss-Prot
Match: PMIP_NEUCR (Mitochondrial intermediate peptidase OS=Neurospora crassa GN=oct-1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 55/201 (27.36%), Postives = 99/201 (49.25%), Query Frame = 2
Query:  134 APSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMKM--ATVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDISFWSERLRES-KYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADGL-APVWNNDVRFYCVKDSSXSPNAYFYFDPYSRP 724
            +P     ++  ++   R +++ A  SR +S    +T  ++ ++ LR E AKL G+++Y  + +  +M  +T +   + L+ L   +   A Q++ DL +  ++    +A  L+ WD  F++E +R++ K     E+L  YFSL  VM GL  +   L+GI   P + +    W+ DVR   V        A  Y D + RP
Sbjct:  289 SPQASIALRTVRDDHARHQLFMA--SRTASRRTVHT--LEELMLLRGESAKLSGFESYGHLVLHDRMMASTPESVRQFLQALSENTRPQAQQEVADLTAAKRAHKGGDAT-LEPWDKDFYAESIRQAIKSRQKREDLSSYFSLGTVMQGLSRIFTRLYGIRFVPREPMPGETWHPDVRRLDVVSDVEGHVAVLYCDLFYRP 484          
BLAST of FC868526 vs. ExPASy Swiss-Prot
Match: PMIP_ASPNC (Mitochondrial intermediate peptidase OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=oct1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 60/208 (28.85%), Postives = 93/208 (44.71%), Query Frame = 2
Query:  116 WIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMKMATVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDISFW-SERLRESKYEINEEELR---PYFSLPKVMDGLFNLAKTLFGIDIEPADGLA-PVWNNDVRFYCVKDSSXSPNAYFYFDPYSRP 724
            W  T   PS   + + A   V  E V R       +        ++++L  R E A+L GY ++A ++++ KMA   +A          S  P VQ  E+L      +G+  A +L  WD +++  +R+ +        EL     +FSL  VM GL  L   L+G+ + P +  A   WN+DVR   V D +    A  Y D +SRP
Sbjct:  273 WNRTASVPSMGLIPRLALRSVHDEGVRREVYLATRTSSARQIQRLEQLLAKRAELAQLSGYDSFAHMTLSDKMAKSPEAVSNFLTSLVGSNRPYVQ--EELAQLQSMKGS--AGRLQPWDHAYYVHQRVLQYSQSRRSRELSAVPEFFSLGTVMQGLSRLFDRLYGVRLVPQETAAGETWNSDVRRLDVVDEADRHIAVIYCDLFSRP 476          
BLAST of FC868526 vs. ExPASy Swiss-Prot
Match: PMIP_COCIM (Mitochondrial intermediate peptidase OS=Coccidioides immitis GN=OCT1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  248 IDRILKLRLEKAKLLGYKNYAEVSMAMKMA-TVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDISFWSER--LRESKYEINEEE--LRPYFSLPKVMDGLFNLAKTLFGIDIEPADGL-APVWNNDVRFYCVKDSSXSPNAYFYFDPYSRP 724
            ++ +L+ R E AKL G+ +YA ++++ KMA T +     LE L +++      ++  L +  K      A +L  WD +++  +   R S+   + E   L  +FS+  V+ GL  L   L+GI + P + L   +WN DVR   V D S    A  Y D ++RP
Sbjct:  315 LETLLQKRAELAKLAGFPSYAHMTLSDKMAKTPEAVVNFLEALNASNRGQVQDELSQLLAL-KQADVPSATQLQPWDHAYYVHQYSARHSRVRRSRESTLLPAFFSIGTVIQGLSRLFTRLYGIRLVPTETLPGEIWNPDVRRLDVVDESDRRLAVIYCDLFTRP 478          
BLAST of FC868526 vs. ExPASy Swiss-Prot
Match: PMIP_PHANO (Mitochondrial intermediate peptidase OS=Phaeosphaeria nodorum GN=OCT1 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 53/205 (25.85%), Postives = 95/205 (46.34%), Query Frame = 2
Query:  146 MSVMQHAKNRVLR----EEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMKMATVDKAFE-LLEKLQSASWDPAVQDMEDLKSFSKSQGALE--ADKLDHWDISFWSERL---RESKY-EINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADGL-APVWNNDVRFYCVKDSSXSPNAYFYFDPYSRP 724
            +S M H    VLR     EV R   S   +        ++++LKLR E A+L GY+ ++ +++  KMA   +A    L+ L   S    + D+ +L    +     +   ++++ WD  ++++++    E  Y +   + L  YFS+  V+ G+  L   L+G+ + P +     VW + VR   V   +    A  Y D +SRP
Sbjct:  279 ISTMHHEAQAVLRFVDDAEVRRETYSAVRTAGSSTIARLEKMLKLRAELAQLSGYETFSHMTLENKMAKTPEAVNTFLKALYEDSRPSVLADLHELMELKRGDAHQDNFPNRMNAWDKFYYTQKMLSTMEGAYKQRTADSLSAYFSVGTVLQGISRLFDRLYGVRLVPQETQPGEVWEDGVRRLDVISDTEGHIAVLYCDLFSRP 483          
The following BLAST results are available for this feature:
BLAST of FC868526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PMIP_NEUCR3.996e-1127.36Mitochondrial intermediate peptidase OS=Neurospora... [more]
PMIP_ASPNC3.996e-1128.85Mitochondrial intermediate peptidase OS=Aspergillu... [more]
PMIP_COCIM5.219e-1130.30Mitochondrial intermediate peptidase OS=Coccidioid... [more]
PMIP_PHANO6.816e-1125.85Mitochondrial intermediate peptidase OS=Phaeosphae... [more]

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Properties
Property NameValue
Genbank descriptionC31001E06EF AbioticL1 Citrus clementina cDNA clone C31001E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868526 ID=FC868526; Name=FC868526; organism=Citrus clementina; type=EST; length=725bp
CCCCGGGATAAGAGATAAGAAAGAAATTGATCCATTACCTGCCACTGCTC
TTGGTTTGGCTGCACAAACAGCGTTGTCCAAGGGGCATGAAAATGCAACT
GCTGAGAATGGGCCATGGATAATTACATTGGACGCTCCAAGTTTTATGTC
CGTCATGCAACATGCTAAAAATCGTGTTTTGCGTGAGGAAGTCTATCGAG
CTTATGTGAGTCGTGCCTCCAGTGGTGATTTGGACAATACACCAATCATT
GACCGAATATTGAAGCTTAGGTTGGAAAAGGCTAAACTTCTCGGTTACAA
AAACTATGCTGAGGTGAGCATGGCAATGAAAATGGCTACTGTTGACAAAG
CATTTGAGCTGCTAGAAAAGCTTCAGAGTGCTTCCTGGGACCCTGCAGTT
CAAGACATGGAAGACCTTAAAAGTTTTTCCAAAAGTCAAGGTGCATTAGA
AGCTGACAAATTGGACCATTGGGACATCAGTTTTTGGAGTGAGAGACTTC
GTGAGTCAAAATATGAGATCAATGAGGAAGAACTTCGGCCATATTTCTCA
TTGCCAAAAGTTATGGATGGCCTTTTCAATCTTGCGAAGACACTTTTTGG
AATCGATATCGAACCGGCTGATGGTCTAGCTCCTGTTTGGAACAATGATG
TCAGATTCTATTGTGTCAAAGATTCTTCANGTAGTCCAAATGCATACTTC
TATTTTGATCCATATTCCCGTCCAT
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