FC868529

Overview
NameFC868529
Unique NameFC868529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868529 vs. ExPASy Swiss-Prot
Match: PP171_ARATH (Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  367 DSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNHIEEAWNVVYKMVASGIQPDA 690
            D + +N   +A S+ G V+EA ++ Q+MKD G  P    Y TLI GY   GK  ++L L+  M     + P+  TYN+LV       H EE   +  +M A G +P+A
Sbjct:  387 DRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMI-GNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNA 493          
BLAST of FC868529 vs. ExPASy Swiss-Prot
Match: PP141_ARATH (Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana GN=At2g01740 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 39/172 (22.67%), Postives = 79/172 (45.93%), Query Frame = 1
Query:  172 TKLMNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNHIEEAWNVVYKMVASGIQPD 687
            T +++    +G    A      ++ +G R  +  Y  +++ L    + K    ++  +EK  + PD ++F  M+NA  +SG +  A+ ++ K+ + G +P     +T+I G    G+  E++    +       K ND  Y +L+ A C +    E   +  K+  +G+ PD
Sbjct:  272 TTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCI------EKANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPD 437          

HSP 2 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 32/141 (22.70%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  265 LITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNHIEEAWNVVYKMVASGIQPD 687
            ++TYT L+    ++   +    + S++ +D ++P+S+++  +I+   + G+ D AMK   KM + G +   + Y  +I G    GK +E+ ++++ M +  ++ P+   +  ++ A+     ++ A N+ +K++  G +PD
Sbjct:  233 VVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDM-EKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPD 372          
BLAST of FC868529 vs. ExPASy Swiss-Prot
Match: PP160_ARATH (Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 43/166 (25.90%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  172 TKLMNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDR--TYNILVRAWCSKNHIEEAWNVVYKM 663
            TK+M +L  +G+  EA  +   +  +G +  ++   TLV       + +       ++E+ G  P+   +N +I    + G +D A+  F  MK    +   +T+NTLI+G    G+ ++ LK+L++M QD +     R   YN ++  +  +N  E+A   + KM
Sbjct:  287 TKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIGGRTDDGLKILEMM-QDSDTVHGARIDPYNCVIYGFYKENRWEDALEFLLKM 451          

HSP 2 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 42/168 (25.00%), Postives = 76/168 (45.24%), Query Frame = 1
Query:  178 LMNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNHIEEAWNVVYKMVASGIQ 681
            L++ L   GK   A      L+ E   P  +T+  L++A   +++    + L+ K    G  PD +    ++      G V EA+++ ++++  G K      NTL+KGY  +GK   + +    M + K   PN  TYN+L+  +C    ++ A +    M    I+
Sbjct:  223 LLHALCKNGKVGRAR----SLMSEMKEPNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFFIEMER-KGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIR 385          
BLAST of FC868529 vs. ExPASy Swiss-Prot
Match: PPR82_ARATH (Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 36/144 (25.00%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  256 RPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNHIEEAWNVVYKMVASGIQPD 687
            +P +++Y TL+ AL  +      ++L+ ++E  G+KPD + FN ++ +    G  +   +I+ KM +        TYN  + G  N  K +E + L   + +   +KP+  ++N ++R   ++  ++EA     ++V  G +PD
Sbjct:  177 KPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKELVNLFGEL-KASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYRPD 319          
BLAST of FC868529 vs. ExPASy Swiss-Prot
Match: PP262_ARATH (Pentatricopeptide repeat-containing protein At3g29290 OS=Arabidopsis thaliana GN=EMB2076 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 46/171 (26.90%), Postives = 89/171 (52.05%), Query Frame = 1
Query:  178 LMNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKP-DSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNHIEEAWNVVYKMVASGIQPD 687
            L+N L   GK      +++ L   GH+P   T+  L+ AL +  R++ +L L   +  + +   +  L+N  + +C + G  ++A+K+  +M+ SG   +TS+YN +I       K + +L + + M+Q ++ KPN  TY  LVR+    +  +E  +++ K     ++PD
Sbjct:  325 LINSLGKAGKVGLVFKVYSVLKSLGHKPDEYTWNALLTALYKANRYEDVLQLFDMIRSENLCCLNEYLYNTAMVSCQKLGYWEKAVKLLYEMEGSGLTVSTSSYNLVISACEKSRKSKVALLVYEHMAQ-RDCKPNTFTYLSLVRSCIWGSLWDEVEDILKK-----VEPD 489          
BLAST of FC868529 vs. ExPASy Swiss-Prot
Match: PP117_ARATH (Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 55/199 (27.64%), Postives = 83/199 (41.71%), Query Frame = 1
Query:  121 CCLVCSGNNGCRTVRSRTK----LMNILV----GKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDG---MKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNHIEEAWNVVYKMVASGIQP 684
            C LV  G    R +R R K      N+L         P +A  +   +IE GH+P   TY   +    +         L   +   G     P +  F  MI A +++   +E  ++  +M  +GC P  STY  +I+G     K +E+ K L  MS +K   P+  TYN  +R  C     +EA  +  +MV S   P
Sbjct:  247 CGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMS-NKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAP 444          
BLAST of FC868529 vs. ExPASy Swiss-Prot
Match: PP366_ARATH (Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 38/148 (25.68%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  247 EGHRPTL--ITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQDKNVKPNDRTYNILVRAWCSKNHIEEAWNVVYKMVASGIQP 684
            EG R  L   TY ++V  L ++   +  L  ++ +++ G KP   ++ ++I    +   +++ ++  QKM+   C+P+  TY  +I GY ++GK EE+    + M +++   P+ +TY+  +   C     E+A  ++ +M+  GI P
Sbjct:  846 EGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNM-EERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKGIAP 992          
BLAST of FC868529 vs. ExPASy Swiss-Prot
Match: PP233_ARATH (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 42/164 (25.61%), Postives = 84/164 (51.22%), Query Frame = 1
Query:  127 LVCSGNN--GCRTVRSRTKLMNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMS-QDKNVKPNDRTYNILVR 609
            L CS     GC  +++   ++N     G  HEA   +  +I    RP +++Y T++ ALT++ +    + L   +      PD  + N +I+A      + EA+++F+++ + G  P   TYN+L+K    + + E+  +L++ M  +  +  PND T++ L++
Sbjct:  235 LFCSRRREFGC-DIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLK 397          
BLAST of FC868529 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 38/131 (29.01%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  172 TKLMNILVGKGKPHEAHYIFNCLIEEGHRPTLITYTTLVAALTRQKRFKSILSLISKVEKDGMKPDSILFNAMINACSESGNVDEAMKIFQKMKDSGCKPTTSTYNTLIKGYGNVGKPEESLKLLQLMSQD 564
            + L+++    G P  A+ +FN    E     L  +  ++ A  +    + ++ L  +++  GMKP+ I F  ++NACS +G VDE    F +MK+S  +PT   Y +L+   G  G+ +E+L+++  M  D
Sbjct:  256 SSLVSLYSKCGVPEGAYQVFN----EVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPID 382          
The following BLAST results are available for this feature:
BLAST of FC868529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
PP171_ARATH1.659e-1136.11Pentatricopeptide repeat-containing protein At2g26... [more]
PP141_ARATH1.659e-1122.67Pentatricopeptide repeat-containing protein At2g01... [more]
PP160_ARATH2.830e-1125.90Pentatricopeptide repeat-containing protein At2g17... [more]
PPR82_ARATH4.828e-1125.00Pentatricopeptide repeat-containing protein At1g55... [more]
PP262_ARATH4.828e-1126.90Pentatricopeptide repeat-containing protein At3g29... [more]
PP117_ARATH4.828e-1127.64Pentatricopeptide repeat-containing protein At1g73... [more]
PP366_ARATH6.305e-1125.68Putative pentatricopeptide repeat-containing prote... [more]
PP233_ARATH6.305e-1125.61Putative pentatricopeptide repeat-containing prote... [more]
PP429_ARATH8.235e-1129.01Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC31001E09EF AbioticL1 Citrus clementina cDNA clone C31001E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868529 ID=FC868529; Name=FC868529; organism=Citrus clementina; type=EST; length=691bp
CTTGCCGGGGGAACAACCATGAGCAAGCAGGTTCTTGAAGCATCGCCAAC
TGTGGAAAAATGTCTACACAGGGACAAGTTACATTCGATCAAAAGTTCTG
TAGCGTCACCAGTGCAATCCTGCTGCCTTGTCTGTTCGGGAAACAATGGC
TGCAGAACAGTCCGTTCAAGGACCAAACTGATGAATATTTTGGTTGGAAA
AGGGAAGCCTCACGAAGCCCATTATATATTCAACTGTTTAATAGAAGAAG
GACACAGACCAACCCTTATTACATACACAACTCTCGTAGCTGCCTTGACT
CGCCAGAAAAGATTCAAGTCCATTCTTTCGCTGATCTCTAAAGTAGAAAA
GGATGGTATGAAGCCTGATTCGATACTCTTCAATGCCATGATTAATGCCT
GTTCTGAATCTGGAAATGTTGATGAAGCCATGAAAATCTTTCAGAAAATG
AAAGATAGTGGATGTAAGCCCACAACCAGCACTTATAATACCCTTATTAA
AGGATATGGAAATGTTGGTAAGCCTGAAGAATCTCTGAAATTACTACAAT
TAATGTCACAGGATAAAAATGTGAAACCGAATGACAGGACTTACAATATT
CTTGTAAGAGCCTGGTGTAGCAAGAACCACATAGAAGAAGCATGGAATGT
GGTCTATAAGATGGTGGCATCTGGTATACAACCTGATGCTG
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