FC868533

Overview
NameFC868533
Unique NameFC868533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8975 contig Ccv1_Contig8975:25..642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868533 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 55/173 (31.79%), Postives = 86/173 (49.71%), Query Frame = 3
Query:   81 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQY 593
            ++++ +L   S      S+     VV AA+  P K          +     +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AML  +G      +G+A      T + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D+ +P S   ++
Sbjct:   24 KSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEW 177          
BLAST of FC868533 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 54/133 (40.60%), Postives = 71/133 (53.38%), Query Frame = 3
Query:  189 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRR 551
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR 175          
BLAST of FC868533 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 54/133 (40.60%), Postives = 71/133 (53.38%), Query Frame = 3
Query:  189 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRR 551
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R
Sbjct:   23 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYR 147          
BLAST of FC868533 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 58/169 (34.32%), Postives = 87/169 (51.48%), Query Frame = 3
Query:   81 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRR 551
            E +R++LG   A+     +     V ++A +  +  GADRP +    S ++ SYL+G   GDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L K+G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R
Sbjct:   23 ELSRKVLGNVEARVTMRRT-----VSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCLTPELLAKSGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 178          
BLAST of FC868533 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 54/133 (40.60%), Postives = 71/133 (53.38%), Query Frame = 3
Query:  189 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRR 551
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR 175          
BLAST of FC868533 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 57/144 (39.58%), Postives = 76/144 (52.78%), Query Frame = 3
Query:  156 VRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRR 551
            V++A T  +  G DRP +    S Q  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R
Sbjct:   41 VKSAPTS-IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175          
BLAST of FC868533 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 59/182 (32.42%), Postives = 84/182 (46.15%), Query Frame = 3
Query:   96 ILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQ----------DWANPGSMGRQYFLGF 605
            +LGA      T   R   FVV AA+  P K          +     +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     +L   ++ LMG+ E +R+           DWA P S   + F  F
Sbjct:   27 LLGAHVTARVTTPKR---FVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANF 186          
BLAST of FC868533 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 58/178 (32.58%), Postives = 88/178 (49.44%), Query Frame = 3
Query:   87 ARQILGARSAQSPTGSSRKGSFVVRAAST-----PPVKQGADR--PLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQY 593
            ++ +L A  A    G++    F V AA+      P V+ G +   P W         LDGSLPGDYGFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D+ +P S   ++
Sbjct:   23 SQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEW---------LDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----TLLGTQLILMGWVESKRWVDFFDPDSQSVEW 172          
BLAST of FC868533 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 52/133 (39.10%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  189 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRR 551
            G+DRPL+    S    SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R
Sbjct:   51 GSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVTPELLAKNGVKFGEA--VWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR 175          
BLAST of FC868533 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 53/133 (39.85%), Postives = 69/133 (51.88%), Query Frame = 3
Query:  189 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRR 551
            G DRP +    S+Q  SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G   PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R
Sbjct:   51 GPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHSRWAMLGALGCTFPELLEKNGVKFGEA--VWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR 175          
The following BLAST results are available for this feature:
BLAST of FC868533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CB4_SPIOL4.552e-1231.79Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB26_PETSP5.945e-1240.60Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC7.765e-1240.60Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB2_PHYPA1.014e-1134.32Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC1.014e-1140.60Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_GOSHI2.259e-1139.58Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB4B_SOLLC2.951e-1132.42Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4A_SOLLC2.951e-1132.58Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB23_POLMU5.033e-1139.10Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB215_PEA8.585e-1139.85Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionC31001F01EF AbioticL1 Citrus clementina cDNA clone C31001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868533 ID=FC868533; Name=FC868533; organism=Citrus clementina; type=EST; length=618bp
GGGGAGAGAACAAGAGGAAAAAAGATCATTAAAAAATGGCAACCCAAGCT
TTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGACAAATTCT
TGGAGCAAGATCAGCTCAATCCCCCACTGGGTCATCAAGAAAAGGTTCCT
TTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCAGACAGA
CCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGCAGCCT
CCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGAAGGCA
CAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCATCAAC
GGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAGATTCT
TGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTTCCAAA
CCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACCCTTAC
ACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCACCGGAG
ATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACTTCCTCG
GATTCGAAGAATACTTGG
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