FC868537

Overview
NameFC868537
Unique NameFC868537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868537 vs. ExPASy Swiss-Prot
Match: TRPD_GEOLS (Anthranilate phosphoribosyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=trpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.217e-22
Identity = 63/151 (41.72%), Postives = 82/151 (54.30%), Query Frame = 1
Query:  250 DLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDI---------------VGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFM 654
            DL+E E    ++ +++ E   A I +F+  LR KGET  EI G AR M + AT +    + +DI               VGTGGDG NT NIST  S + +ACG KVAK             DVLE LGV +D+ PE V RC++E GIGF+
Sbjct:   14 DLSEGEMIEVMNQIMSGECTPAQIGSFITALRMKGETIAEISGAARVMRERATPIRVGRNVLDIDRDDINLDQETILDVVGTGGDGTNTFNISTTVSFIVSACGVKVAKHGNRSVSSACGSADVLEKLGVNLDVTPEQVERCINEIGIGFL 164          
BLAST of FC868537 vs. ExPASy Swiss-Prot
Match: TRPD_VEREI (Anthranilate phosphoribosyltransferase OS=Verminephrobacter eiseniae (strain EF01-2) GN=trpD PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.508e-22
Identity = 59/121 (48.76%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  298 EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFM 654
            E   A+ +A +  LR K ET GEI   A+ M +++TKV+       VDIVGTGGDGA+T NIST A  +AAA GAKV+K             DV+EALG+ I L PE + RC+ E GIGFM
Sbjct:   34 ELSPAMTAAIITGLRVKKETIGEITAAAQVMREFSTKVQVPDRKHLVDIVGTGGDGASTFNISTCAMFVAAAAGAKVSKHGGRSVSSKSGSADVMEALGIHIHLAPEAIARCIAEVGIGFM 154          
BLAST of FC868537 vs. ExPASy Swiss-Prot
Match: TRPD_PSEMY (Anthranilate phosphoribosyltransferase OS=Pseudomonas mendocina (strain ymp) GN=trpD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.508e-22
Identity = 63/149 (42.28%), Postives = 86/149 (57.72%), Query Frame = 1
Query:  220 ELIDCLISRVDLTEAEAQASL-DYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA---VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFM 654
            E ++ +++++DLT  E QA + + +  +  +A I AFL+ +R K ET  EIVG A  M + A  V  + DA   VD  GTGGDG N  N+ST A+ + AA G KVAK             D+LEA GV + L PE V RCV+  G+GFM
Sbjct:    5 EALNRIVAQLDLTTEEMQAVMREIMTGQCTDAQIGAFLMGMRMKSETIDEIVGAASVMRELAAPV--VIDAERLVDTCGTGGDGMNIFNVSTAAAFVVAAAGGKVAKHGNRAVSGKSGSADLLEAAGVYLGLKPEQVARCVESVGVGFM 151          
BLAST of FC868537 vs. ExPASy Swiss-Prot
Match: TRPD_PSEF5 (Anthranilate phosphoribosyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.508e-22
Identity = 57/143 (39.86%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  235 LISRVDLTEAEAQASL-DYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFM 654
            ++  +DL+  E ++ + + +  +  +A I AF++ +R K E+  EIVG   AM + A +VE   L   VD+VGTGGDGAN  N+ST +S + AA G  VAK             D+LEA G+ ++L P  V RC+D  GIGFM
Sbjct:   10 IVGHLDLSTEEMRSVMREIMTGQCTDAQIGAFMMAMRMKSESIDEIVGAVSAMRELADRVELKTLDGVVDVVGTGGDGANIFNVSTASSFVVAAAGCTVAKHGNRAVSGKSGSADLLEAAGIYLNLTPVQVARCIDNVGIGFM 152          
BLAST of FC868537 vs. ExPASy Swiss-Prot
Match: TRPD_ROSS1 (Anthranilate phosphoribosyltransferase OS=Roseiflexus sp. (strain RS-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 62/136 (45.59%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  250 DLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFM 654
            DL+E +A  +++ ++   A  A ++A L  L  KGET  EI G+AR M   A  V      +D  GTGGDGA T NIST A+ +AA  GA VAK             DVLE LGV I+LD   V RC+D+AGIGFM
Sbjct:   15 DLSEDQAAEAMEEIMTGMATPAQVAALLTALHLKGETDAEIAGMARVMRAKAIPVHFDAPLLDTCGTGGDGAGTFNISTTAAFIAAGAGAIVAKHGNRAMSSVCGSADVLEGLGVNIELDAASVARCLDQAGIGFM 150          
BLAST of FC868537 vs. ExPASy Swiss-Prot
Match: TRPD_RHORT (Anthranilate phosphoribosyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=trpD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 60/135 (44.44%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  253 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFM 654
            L+EA+A  + + +++  A  A I  FL+ LR +GET  EI   AR M   A +++    A+DIVGTGGD A T NIST A+++ AACG  VAK             DVL ALGV +D D   V R + E GIGFM
Sbjct:   24 LSEADATRAFEAIMSGNATPAQIGGFLMALRVRGETVAEITAAARTMRDKAARIQAPAGAIDIVGTGGDCAGTYNISTAAALVTAACGVPVAKHGNRAASSKSGSADVLAALGVNLDADLALVERSIAEVGIGFM 158          
BLAST of FC868537 vs. ExPASy Swiss-Prot
Match: TRPD_PSEPW (Anthranilate phosphoribosyltransferase OS=Pseudomonas putida (strain W619) GN=trpD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 60/143 (41.96%), Postives = 81/143 (56.64%), Query Frame = 1
Query:  235 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFM 654
            ++  +DL+  E +  +  ++  +  EA I AFL+ +R K E+  EIVG    M + A KVE   L   VDIVGTGGDGAN  N+ST +S + AA G  VAK             D+LEA G+ ++L P  V RC+D  GIGFM
Sbjct:   10 IVGHLDLSTEEMRDVMRQIMTGQCSEAQIGAFLMGMRMKSESIDEIVGAVSVMRELADKVELKSLDGVVDIVGTGGDGANIFNVSTASSFVLAAAGCTVAKHGNRAVSGKSGSADLLEAAGIYLNLTPTQVGRCIDSLGIGFM 152          
BLAST of FC868537 vs. ExPASy Swiss-Prot
Match: TRPD_MYCS2 (Anthranilate phosphoribosyltransferase OS=Mycobacterium smegmatis GN=trpD PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 69/164 (42.07%), Postives = 90/164 (54.88%), Query Frame = 1
Query:  172 QPAVSDNTRPQTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKV--EGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGF 651
            QP  S +     P +  ++  L +  +L    A  ++D ++   A  A IS F V ++ K  T  E+  LA  M+ +A +V  + +G D VDIVGTGGDGANTVN+ST ASI+ AACG  V K             D LEALGV IDL P+ V R V E GIGF
Sbjct:    7 QPFPSASGPDDGPSWPRILGRLTTGQNLPNGHAAWAMDQIMTGAATPAQISGFAVSMKMKRPTASEVRELADIMLTHARRVPTDEIGTDTVDIVGTGGDGANTVNLSTMASIVVAACGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDDVARSVREVGIGF 170          
BLAST of FC868537 vs. ExPASy Swiss-Prot
Match: TRPD_METNO (Anthranilate phosphoribosyltransferase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=trpD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = 1
Query:  253 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFM 654
            LT  EA+ + D+LL+ E   A   AFL+ LR +GE   EIVG A A+ +   +V     A+DIVGTGGD + + N+ST A+I+ A+CG  VAK             DVL ALGV + LDPE + +C+ +AG+ FM
Sbjct:   17 LTREEARTAFDHLLSGEVTHAQAGAFLMALRVRGEAADEIVGAAGALRERMVRVAAPPGAIDIVGTGGDHSGSYNVSTLAAIITASCGVPVAKHGNRAASSRSGAADVLAALGVRLGLDPEALAQCLAQAGLCFM 151          
BLAST of FC868537 vs. ExPASy Swiss-Prot
Match: TRPD_AGRT5 (Anthranilate phosphoribosyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=trpD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 59/135 (43.70%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  253 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFM 654
            L   +A+ + D L++ EA  + I  FL+ LR +GET  EIVG   +M      V    +A+DIVGTGGDG  T NIST ASI+ A  G  VAK             D L ALGV +D+ P+ + RC+ EAG+GFM
Sbjct:   17 LNREDARTAFDILMSGEATPSQIGGFLMALRVRGETVDEIVGAVSSMRARMLPVSAPANAIDIVGTGGDGIGTYNISTLASIITAGTGLPVAKHGNRALSSKSGTADALSALGVRLDIGPDLIARCIAEAGLGFM 151          
The following BLAST results are available for this feature:
BLAST of FC868537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_GEOLS4.217e-2241.72Anthranilate phosphoribosyltransferase OS=Geobacte... [more]
TRPD_VEREI5.508e-2248.76Anthranilate phosphoribosyltransferase OS=Verminep... [more]
TRPD_PSEMY5.508e-2242.28Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PSEF55.508e-2239.86Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_ROSS17.193e-2245.59Anthranilate phosphoribosyltransferase OS=Roseifle... [more]
TRPD_RHORT7.193e-2244.44Anthranilate phosphoribosyltransferase OS=Rhodospi... [more]
TRPD_PSEPW7.193e-2241.96Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_MYCS27.193e-2242.07Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_METNO7.193e-2243.70Anthranilate phosphoribosyltransferase OS=Methylob... [more]
TRPD_AGRT57.193e-2243.70Anthranilate phosphoribosyltransferase OS=Agrobact... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001F06EF AbioticL1 Citrus clementina cDNA clone C31001F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868537 ID=FC868537; Name=FC868537; organism=Citrus clementina; type=EST; length=658bp
GGCAACACAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTC
CTCTCCATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGC
TTCGAAACTGTGGATTTACGACTGCGGGTAGTAATCCGAGATGCAGAGAA
TTAACTGCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGCCC
TCAAACGCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGG
ATTTAACGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAA
GCTGATGAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGG
AGAAACATTTGGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATG
CTACGAAGGTGGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGA
GGTGATGGTGCAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGC
TGCAGCTTGTGGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTT
CTGCATGTGGAAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGAC
TTGGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTT
CATGATGT
back to top