FC868539

Overview
NameFC868539
Unique NameFC868539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig17 contig Ccv1_Contig17:112..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868539 vs. ExPASy Swiss-Prot
Match: ACSF_PROM4 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9211) GN=acsF PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.838e-22
Identity = 55/147 (37.41%), Postives = 85/147 (57.82%), Query Frame = 3
Query:  231 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFVTKARKYTF 668
            + E LLTPRFYTT+FD+       + + ++ + +F+A+  E + DYN  HF R        +++    + ++  +L RS  +EFSGFLL+KE+  R KK   P + + F  ++RDEARHAGFL + L +    +DL  + K R  TF
Sbjct:   23 LDENLLTPRFYTTEFDKA-----AKTDLEIARRDFQAMFNEMEADYNLKHFDRKASLARL-NELSPKDKSVYESYLVRSVVSEFSGFLLFKEISNRFKKAKRPELGQFFQFLARDEARHAGFLGRALKEEGINIDLPNLPKKRAATF 163          
BLAST of FC868539 vs. ExPASy Swiss-Prot
Match: ACSF_PROMA (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus GN=acsF PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.285e-21
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  231 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFVTKARKYTF 668
            + E LLTPRFYTT+F++     + EI +K    +FEA+ +E + DYN  HF R K   E  D++    + ++  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L      +DL  + K R  TF
Sbjct:   21 LDENLLTPRFYTTEFEKAAKT-DLEIARK----DFEAMFKEMEADYNLKHFDR-KASLERLDELSPEDKAVYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKTEGINVDLPNLPKKRAATF 161          
BLAST of FC868539 vs. ExPASy Swiss-Prot
Match: ACSF_PROM3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9303) GN=acsF PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.421e-20
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 3
Query:  231 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFVTKARKYTF 668
            + + LLTPRFYTT+FD+      T+++  + + +FEA+ +E + DYN  HF R    +  AD +    + I+  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L      +DL  +   R  TF
Sbjct:   23 LDDNLLTPRFYTTEFDKAA---KTDLD--IARKDFEAMFKEMEADYNLKHFDRKASLERLAD-LSPEDKAIYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKAEGINVDLPNLGNKRAPTF 163          
BLAST of FC868539 vs. ExPASy Swiss-Prot
Match: ACSF_PROMM (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9313) GN=acsF PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.133e-20
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 3
Query:  231 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFVTKARKYTF 668
            + + LLTPRFYTT+FD+      T+++  + + +FEA+ +E + DYN  HF R K   E   ++    + I+  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L      +DL  +   R  TF
Sbjct:   23 LDDNLLTPRFYTTEFDKAA---KTDLD--IARKDFEAMFKEMEADYNLKHFDR-KASLERLSELSPEDKAIYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKAEGINVDLPNLGNKRAATF 163          
The following BLAST results are available for this feature:
BLAST of FC868539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ACSF_PROM49.838e-2237.41Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMA1.285e-2140.82Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROM31.421e-2038.78Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMM4.133e-2038.78Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001F08EF AbioticL1 Citrus clementina cDNA clone C31001F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868539 ID=FC868539; Name=FC868539; organism=Citrus clementina; type=EST; length=676bp
ACTCTCTAGTTCCTCCCCTGGTTCCAGAAATGGCAGCTGAGATGGCACTG
GTCAAACCGATTAGCAAATTCAGCACCATCGCCACCACTACTAAGCCTAG
GTTCAGCTACCCGAAAGCAACATGTACATCTCTGAGCACAAGATTTTGTA
CAATCAAAATGTCAGCAACTTCAGAGCAAGCGGCTGCTGCCACTGCCCAA
AAGCCAAGCAAGAAATCAAACAAAACTGCTATCAAGGAGACCCTTCTGAC
ACCAAGGTTTTATACAACAGATTTTGATGAAATGGAGACCCTTTTCAACA
CTGAGATCAACAAGAAGCTCAACCAGGCTGAATTTGAGGCATTGCTTCAA
GAATTCAAGACTGATTATAACCAGACTCACTTTGTGAGGAACAAGGAGTT
CAAGGAAGCTGCTGACAAGATGCAAGGCCCTCTCAGGCAGATCTTTGTTG
AGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTGGTTTCCTTCTTTAC
AAAGAGCTCGGAAGGAGACTCAAGAAAACCAACCCAGTGGTAGCTGAGAT
TTTCTCTCTGATGTCCAGGGATGAAGCCAGGCATGCCGGGTTTCTGAACA
AGGGGCTATCTGATTTCAATTATGCATTGGACTTGGGCTTCGTGACNAAA
GCTAGGAAATACACATTTGTCAGCCA
back to top