Overview
Name FC868539
Unique Name FC868539
Type EST
Organism Citrus clementina (Clementine)
Sequence length 676
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868539 vs. ExPASy Swiss-Prot
Match:
ACSF_PROM4 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9211) GN=acsF PE=3 SV=1)
HSP 1 Score: 103.605 bits (257), Expect = 9.838e-22
Identity = 55/147 (37.41%), Postives = 85/147 (57.82%), Query Frame = 3
Query: 231 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFVTKARKYTF 668
+ E LLTPRFYTT+FD+ + + ++ + +F+A+ E + DYN HF R +++ + ++ +L RS +EFSGFLL+KE+ R KK P + + F ++RDEARHAGFL + L + +DL + K R TF
Sbjct: 23 LDENLLTPRFYTTEFDKA-----AKTDLEIARRDFQAMFNEMEADYNLKHFDRKASLARL-NELSPKDKSVYESYLVRSVVSEFSGFLLFKEISNRFKKAKRPELGQFFQFLARDEARHAGFLGRALKEEGINIDLPNLPKKRAATF 163
BLAST of FC868539 vs. ExPASy Swiss-Prot
Match:
ACSF_PROMA (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus GN=acsF PE=3 SV=1)
HSP 1 Score: 103.219 bits (256), Expect = 1.285e-21
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = 3
Query: 231 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFVTKARKYTF 668
+ E LLTPRFYTT+F++ + EI +K +FEA+ +E + DYN HF R K E D++ + ++ +L RS +EFSGFLL+KE+ R KK + + F+ ++RDEARHAGFL + L +DL + K R TF
Sbjct: 21 LDENLLTPRFYTTEFEKAAKT-DLEIARK----DFEAMFKEMEADYNLKHFDR-KASLERLDELSPEDKAVYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKTEGINVDLPNLPKKRAATF 161
BLAST of FC868539 vs. ExPASy Swiss-Prot
Match:
ACSF_PROM3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9303) GN=acsF PE=3 SV=1)
HSP 1 Score: 99.7525 bits (247), Expect = 1.421e-20
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 3
Query: 231 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFVTKARKYTF 668
+ + LLTPRFYTT+FD+ T+++ + + +FEA+ +E + DYN HF R + AD + + I+ +L RS +EFSGFLL+KE+ R KK + + F+ ++RDEARHAGFL + L +DL + R TF
Sbjct: 23 LDDNLLTPRFYTTEFDKAA---KTDLD--IARKDFEAMFKEMEADYNLKHFDRKASLERLAD-LSPEDKAIYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKAEGINVDLPNLGNKRAPTF 163
BLAST of FC868539 vs. ExPASy Swiss-Prot
Match:
ACSF_PROMM (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9313) GN=acsF PE=3 SV=1)
HSP 1 Score: 98.2117 bits (243), Expect = 4.133e-20
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 3
Query: 231 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFVTKARKYTF 668
+ + LLTPRFYTT+FD+ T+++ + + +FEA+ +E + DYN HF R K E ++ + I+ +L RS +EFSGFLL+KE+ R KK + + F+ ++RDEARHAGFL + L +DL + R TF
Sbjct: 23 LDDNLLTPRFYTTEFDKAA---KTDLD--IARKDFEAMFKEMEADYNLKHFDR-KASLERLSELSPEDKAIYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKAEGINVDLPNLGNKRAATF 163
The following BLAST results are available for this feature:
BLAST of FC868539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 44
100 200 300 400 500 600 Expect = 9.84e-22 / Id = 37.41 Expect = 1.28e-21 / Id = 40.82 Expect = 1.42e-20 / Id = 38.78 Expect = 4.13e-20 / Id = 38.78 Sequence ACSF_PROM4 ACSF_PROMA ACSF_PROM3 ACSF_PROMM
Match Name E-value Identity Description
ACSF_PROM4 9.838e-22 37.41 Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMA 1.285e-21 40.82 Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROM3 1.421e-20 38.78 Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMM 4.133e-20 38.78 Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
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Properties
Property Name Value
Genbank description C31001F08EF AbioticL1 Citrus clementina cDNA clone C31001F08, mRNA sequence.
Sequences
The
following sequences are available for this feature:
EST sequence
>FC868539 ID=FC868539; Name=FC868539; organism=Citrus clementina; type=EST; length=676bp ACTCTCTAGTTCCTCCCCTGGTTCCAGAAATGGCAGCTGAGATGGCACTG GTCAAACCGATTAGCAAATTCAGCACCATCGCCACCACTACTAAGCCTAG GTTCAGCTACCCGAAAGCAACATGTACATCTCTGAGCACAAGATTTTGTA CAATCAAAATGTCAGCAACTTCAGAGCAAGCGGCTGCTGCCACTGCCCAA AAGCCAAGCAAGAAATCAAACAAAACTGCTATCAAGGAGACCCTTCTGAC ACCAAGGTTTTATACAACAGATTTTGATGAAATGGAGACCCTTTTCAACA CTGAGATCAACAAGAAGCTCAACCAGGCTGAATTTGAGGCATTGCTTCAA GAATTCAAGACTGATTATAACCAGACTCACTTTGTGAGGAACAAGGAGTT CAAGGAAGCTGCTGACAAGATGCAAGGCCCTCTCAGGCAGATCTTTGTTG AGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTGGTTTCCTTCTTTAC AAAGAGCTCGGAAGGAGACTCAAGAAAACCAACCCAGTGGTAGCTGAGAT TTTCTCTCTGATGTCCAGGGATGAAGCCAGGCATGCCGGGTTTCTGAACA AGGGGCTATCTGATTTCAATTATGCATTGGACTTGGGCTTCGTGACNAAA GCTAGGAAATACACATTTGTCAGCCA back to top