FC868541

Overview
NameFC868541
Unique NameFC868541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868541 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.621e-13
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 2
Query:  317 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 520
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL+K G+      W+ AG
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAG 133          
BLAST of FC868541 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.424e-13
Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = 2
Query:  281 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLF--------IVEMIFIGWAEGRR 598
            PNR  W   +  +  P +L G  PGD+G+D  GL +DPET +   + E++H RWAMLGA G   PELL K G       W+ AG        L+Y  + + +          V++I +G  EG R
Sbjct:   39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR 163          
BLAST of FC868541 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.424e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  317 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 604
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A
Sbjct:   69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 180          
BLAST of FC868541 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.424e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  317 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 604
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +        +++  ++I +G  EG R A
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVA 176          
BLAST of FC868541 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.424e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  317 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 604
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 181          
BLAST of FC868541 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.424e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  317 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 604
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A
Sbjct:   29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 140          
BLAST of FC868541 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.471e-13
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 2
Query:  317 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 604
            P +L G  PGD+G+D   L +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179          
BLAST of FC868541 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.471e-13
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  314 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 604
            PP +L G  PGD+G+D  GL +DPET   N + E++H  WAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:    6 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA 118          
BLAST of FC868541 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.471e-13
Identity = 41/112 (36.61%), Postives = 59/112 (52.68%), Query Frame = 2
Query:  317 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 604
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA 178          
BLAST of FC868541 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.471e-13
Identity = 41/112 (36.61%), Postives = 59/112 (52.68%), Query Frame = 2
Query:  317 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 604
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA 178          
The following BLAST results are available for this feature:
BLAST of FC868541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_LEMGI2.621e-1349.28Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE3.424e-1336.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB28_PEA3.424e-1336.61Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_APIGR3.424e-1336.61Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PEA3.424e-1336.61Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_PEA3.424e-1336.61Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB25_PETSP4.471e-1335.71Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB22_CUCSA4.471e-1335.40Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB22_ARATH4.471e-1336.61Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH4.471e-1336.61Chlorophyll a-b binding protein 165/180, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionC31001F11EF AbioticL1 Citrus clementina cDNA clone C31001F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868541 ID=FC868541; Name=FC868541; organism=Citrus clementina; type=EST; length=642bp
GAAGTTTTTGTATCTTCTGTTCTCCGCCAATTGTATTCTACTTTACACGC
ACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAA
ATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAG
TTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTG
GTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGA
TCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTT
CCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACT
TCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGG
AACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGC
AGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTC
CATCCTGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACACCACCACC
CTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTG
GGCCGACATTATAAGCCAGGCTGTGTGAACACTGACCCGATC
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