FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 60/149 (40.27%), Postives = 80/149 (53.69%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEV 448
            G  E  +TL QLL EMDGF+    + VIAATNR DILD ALLRPGRFDR + V +PD +GR EILKVH + K     V L VIA  T G SG               R  +  ++  +   ++D+++        ++ +    +A HEV
Sbjct:  254 GEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVH-TRKMNLKGVDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDFLKAVDKVIG-------SEKRLAQQIAMHEV 394          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G+ E ++TL QLL EMDGF+    + +I ATNR DILD A+LRPGRFDR + V  PD +GR EILK+H        DV+L+ IA  T G  G
Sbjct:  286 GDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVG 377          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            ++ +NQLLTE+DG E    ++VIAATNR DI+D ALLRPGR DR + V VPD + R +I K+H  +     DV+L+ +A +T G++G
Sbjct:  571 DKVVNQLLTELDGMEEPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTG 657          

HSP 2 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 2
Query:   32 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            QLLT MDG +G   ++VI ATNR + LD AL RPGRFDR++ + VPD  GR EIL++H  N     DV LD +A  T GF G
Sbjct:  302 QLLTLMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYLADVTHGFVG 383          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 50/125 (40.00%), Postives = 67/125 (53.60%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDR 376
            G+ E  +TL QLL EMDGF     + +I ATNR DILD ALLRPGRFDR + +  PDI GR  IL +H +    D  V +  IA RT G +G               R     ++ ++ + SI++
Sbjct:  269 GDREVHRTLMQLLAEMDGFSNRGDVRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGADLRSICMEAGMFAIRSDHEMVTLEDFEQSIEK 393          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 49/123 (39.84%), Postives = 68/123 (55.28%), Query Frame = 2
Query:   11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRI 379
            E ++TL QLL EMDGF+    I +IAATNR D+LD A+LRPGRFDR V V +P I  R +ILK+H        D+    +A  T G SG               RR K  +  +E  ++++++
Sbjct:  278 EVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEFLEAVEKV 400          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 2
Query:   11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDG 415
            E ++TL QLL EMDGF+    I +IAATNR D+LD A+LRPGRFDR V V +P I  R +ILK+H        D+    +A  T G SG               R+ KA +  ++  ++++++    +   M  G
Sbjct:  278 EVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDFLEAVEKVSMAADTQKMMPG 412          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: SAV_SULAC (Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E+ +NQLL EMDG      +++IAATNR DILD ALLRPGRFDR + V  PD   R EILKVH  N     DVSL+ IA +  G++G
Sbjct:  606 ERIVNQLLAEMDGIVPLNKVVIIAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLEDIAEKAEGYTG 692          

HSP 2 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            ++ + QLLT MDG +G   +IVI ATNR D +D AL RPGRFDR++ +  PD +GR +IL+VH  N     DV LD +A  T G++G
Sbjct:  330 KRVVAQLLTLMDGIKGRGRVIVIGATNRPDAIDPALRRPGRFDREIEIRPPDTKGRKDILQVHTRNMPITDDVDLDKLAEMTYGYTG 416          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 41/131 (31.30%), Postives = 75/131 (57.25%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME 394
            G++E ++T+ +++ ++DGF+    I V+ ATNR D LD ALLRPGR DR+V   +PD+ GRT+I K+H      + D+  +++A   P  +G               R  +  ++ K+  D++++++ G +
Sbjct:  284 GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQ 414          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 41/131 (31.30%), Postives = 75/131 (57.25%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME 394
            G++E ++T+ +++ ++DGF+    I V+ ATNR D LD ALLRPGR DR+V   +PD+ GRT+I K+H      + D+  +++A   P  +G               R  +  ++ K+  D++++++ G +
Sbjct:  284 GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQ 414          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: VAT_THEAC (VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E+ +NQLLT +DG E   G++VI ATNR DI+D ALLR GRFD+ + +  PD   R  ILKVH  N     DV L+ IA RT G+ G
Sbjct:  586 ERIVNQLLTSLDGIEVMNGVVVIGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILKVHTKNMPLAPDVDLNDIAQRTEGYVG 672          

HSP 2 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN-----KKFDADVSLDVIAMRTPGFSG 277
            G  ER + + QLLT MDG +    +IVI ATNR D +D AL RPGRFDR++ + VPD  GR EIL +H  N      + + +  L+ +A  T GF G
Sbjct:  304 GEVER-RVVAQLLTLMDGMKERGHVIVIGATNRIDAIDPALRRPGRFDREIEIGVPDRNGRKEILMIHTRNMPLGMSEEEKNKFLEEMADYTYGFVG 399          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
PSMR_PYRKO1.036e-1840.27Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_METJA1.036e-1852.17Proteasome-activating nucleotidase OS=Methanocaldo... [more]
Y1156_METJA3.015e-1849.43Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
PSMR_METPE3.015e-1840.00Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_METMA3.015e-1839.84Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METAC3.015e-1837.04Proteasome-activating nucleotidase OS=Methanosarci... [more]
SAV_SULAC5.143e-1855.17Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE... [more]
PRS7_SPIOL1.146e-1731.3026S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_ORYSJ1.146e-1731.3026S protease regulatory subunit 7 OS=Oryza sativa ... [more]
VAT_THEAC1.955e-1751.72VCP-like ATPase OS=Thermoplasma acidophilum GN=vat... [more]

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Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
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