FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIV 382
            G+ E ++TL QLL EMDGF+    + ++AATNR DILD ALLRPGRFDR + V +P    R +ILK+H        DV L  IA+ T   SG               R  +  + S + + ++ +++
Sbjct:  275 GDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEAGMFAIRNNRDVVDSSDFNAAVAKVM 401          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 54/149 (36.24%), Postives = 79/149 (53.02%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEV 448
            G  E  +TL QLL EMDGF+ +  + +IAATNR DILD ALLRPGRFDR + V +P+ + R EILK+H         V L +IA  T G SG               R  +  ++ ++   +I++++        ++ +    +A HEV
Sbjct:  255 GEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKSRLEILKIHTKRMNLKG-VDLRIIAEMTEGASGADLKAITMEAGMFAIRDRREYVTQEDFLKAIEKVLG-------SEQRLSQQIAMHEV 395          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G+ E ++TL QLL  MDGFE    + +I ATNR DILD+ALLRPGRFDR + + +PD  GR  ILKVH        DV L  +A  T G +G
Sbjct:  269 GDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNG 360          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 51/126 (40.48%), Postives = 70/126 (55.56%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRI 379
            G+ E ++TL QLL  MDGFE    + +I ATNR DILD ALLRPGRFDR + + +PD  GR  ILKVH      +  V+L  IA  T G +G               R  + AI+ ++   +I+++
Sbjct:  294 GDREVQRTLMQLLAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNGADLRAICMEAGMYAIRNERPAITREDFLSAIEKV 419          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 43/129 (33.33%), Postives = 73/129 (56.59%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG 388
            G++E ++T+ +L+T++DGF+    I V+ ATNR + LD AL+RPGR DR+V   +PD+ GR  IL++H  +   D D+  ++IA   P  +G               R  +   + K+  D++ ++V G
Sbjct:  295 GDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKVVKG 423          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 46/128 (35.94%), Postives = 70/128 (54.69%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVA 385
            G+ E ++T+ +LL ++DGF  +  + +IAATNR DILD ALLR GR DR++   +P+  GR  IL++H        DV+ D +A  T GF+G               R+ K  IS  +  D I  +++
Sbjct:  264 GDREVQRTMLELLNQLDGFSSSEEVKIIAATNRVDILDPALLRSGRLDRKIEFPLPNTLGRKRILQIHARKMSVRDDVNFDELARSTEGFNGAQCKAVCVEAGMAALRKEKTEISQNDFMDGIQEVLS 391          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E+ ++QLLTE+DG E    ++VIAATNR D++D ALLRPGR +R + +  PD + R EI K+H   K    DV+++ +A +T G+SG
Sbjct:  574 ERVVSQLLTELDGLEELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSG 660          

HSP 2 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  ER + + QLL  MDG E    +IVIAATNR D +D AL RPGRFDR++ + VPD  GR EIL++H        DV L+ +A  T GF G
Sbjct:  296 GEVER-RVVAQLLALMDGLEARGDVIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVG 386          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIV 382
            G+ E ++T+ QLL E+DGF+    + VI ATNR DILD A+LRPGRFDR + V +P   GR +I K+H    K   DV    +A  T G SG               R  +A ++  +   +I++++
Sbjct:  257 GDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIREERAKVTMLDFTKAIEKVL 383          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 40/131 (30.53%), Postives = 74/131 (56.49%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME 394
            G++E ++T+ +++ ++DGF+    I V+ ATNR D LD ALLRPGR DR+V   +PD+  RT+I K+H      + D+  +++A   P  +G               R  +  ++ K+  D++++++ G +
Sbjct:  283 GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQ 413          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 43/129 (33.33%), Postives = 72/129 (55.81%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG 388
            G++E ++T+ +L+ ++DGF+    I V+ ATNR D LD AL+RPGR DR+V   +PD+ GR  ILK+H      + D+  D++A   P  +G               R  +   + K+  ++I+++V G
Sbjct:  293 GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKVVKG 421          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
PSMR_UNCMA2.553e-1737.80Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_THEON2.553e-1736.24Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_METHJ3.334e-1751.09Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_METB63.334e-1740.48Proteasome-activating nucleotidase OS=Methanoregul... [more]
PRS7_SCHPO3.334e-1733.3326S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS6A_ENCCU4.354e-1735.9426S protease regulatory subunit 6A OS=Encephalitoz... [more]
Y1297_ARCFU5.687e-1747.13Cell division cycle protein 48 homolog AF_1297 OS=... [more]
PSMR_ARCFU5.687e-1737.01Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PRS7_PRUPE5.687e-1730.5326S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7_CAEEL5.687e-1733.3326S protease regulatory subunit 7 OS=Caenorhabditi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
back to top