FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            ++ +NQ+LT+MDG EG  G+ V+AAT+R D++DSALLRPGR D+ V  D+PD   R +IL+    N      V+L  +A    GFSG
Sbjct:  917 DRVVNQMLTQMDGAEGLDGVYVLAATSRPDLIDSALLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKSVNLSSVAGECSGFSG 1003          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: TERA_XENTR (Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis GN=vcp PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.401e-15
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G    ++ +NQ+LTEMDG      + +I ATNR DI+D A+LRPGR D+ + + +PD + R  ILK +        DV LD +A  T GFSG
Sbjct:  593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPVAKDVDLDFLAKMTNGFSG 684          

HSP 2 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  ER + ++QLLT MDG +    +IV+AATNR + +D AL R GRFDR+V + +PD  GR EIL++H  N K   DV L+ +A  T G  G
Sbjct:  318 GEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGHVG 408          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: TERA2_CAEEL (Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            ++ ++QLLT MDG +    ++VIAATNR + +D AL R GRFDR++ + +PD  GR EIL++H  N K   DV L+ +A    GF G
Sbjct:  327 KRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANECHGFVG 413          

HSP 2 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            ++ +NQ+LTEMDG      + +I ATNR DI+D A+LRPGR D+ + + +PD   R +I K         AD+ L+ +A  T GFSG
Sbjct:  603 DRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSG 689          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 205
            G+ E ++TL QLL EMDGF+    + +IAATNR DILD A+LRPGRFDR + + +PD  GR +ILK+H
Sbjct:  264 GDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIH 331          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 205
            G+ E ++TL QLL EMDGF+    + +IAATNR DILD A+LRPGRFDR + + +PD  GR +ILK+H
Sbjct:  264 GDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIH 331          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 49/147 (33.33%), Postives = 72/147 (48.98%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYH 442
            G+ E ++T+ +LL ++DGF  +  I VIAATNR DILD ALLR GR DR++   +P+   R  IL++H       ADV+ D +A  +  F+G               RRG   +   +           +EG V    K K  + Y+
Sbjct:  284 GDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDF----------VEGCVEVMAKKKKTLEYY 420          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 39/129 (30.23%), Postives = 72/129 (55.81%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG 388
            G++E ++T+ +L+T++DGF+    I V+ ATNR + LD ALLRPGR DR+V   +PD+ GR  I ++H  +   +  +  ++I+   P  +G               R  +   + K+   ++D++++G
Sbjct:  325 GDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 453          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 47/147 (31.97%), Postives = 75/147 (51.02%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYH 442
            G+ E ++T+ +LL ++DGF+  T + VIAATNR DILD ALLR GR DR++   +P+   R  I+++H        DV+ + +A  T  F+G               RRG   ++ ++           MEG +    K K+ + Y+
Sbjct:  267 GDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGIIALRRGATELTHEDY----------MEGILEVQAKKKANLQYY 403          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRTPGFSG 277
            +  +NQLL++MDG E    I+VI  TNR D++D ALLRPGR + Q+ V +PD  GR +ILK+H +      K D +V L+ I+ RT  FSG
Sbjct:  425 DTVVNQLLSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSG 515          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E+ L+ LLTEMDG E   GI+V+AATNR   +D+AL+RPGRFD  + V  PD+  R EIL+VH  N     DV L  IA  T  F+G
Sbjct:  408 ERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTG 494          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
PEX1_PICPA1.072e-1547.13Peroxisome biosynthesis protein PAS1 OS=Pichia pas... [more]
TERA_XENTR1.401e-1543.48Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA2_CAEEL1.829e-1545.98Transitional endoplasmic reticulum ATPase homolog ... [more]
PSMR_METM61.829e-1557.35Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM51.829e-1557.35Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS6A_DICDI1.829e-1533.3326S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS7_YEAST2.389e-1530.2326S protease regulatory subunit 7 homolog OS=Sacch... [more]
PR6AB_XENLA2.389e-1531.9726S protease regulatory subunit 6A-B OS=Xenopus la... [more]
NSF_CAEEL2.389e-1547.25Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
CD48B_ARATH2.389e-1551.72Cell division control protein 48 homolog B OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
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