FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: TERA_XENLA (Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  ER + ++QLLT MDG +    +IV+AATNR + +D AL R GRFDR+V + +PD  GR EIL++H  N K   DV L+ +A  T G  G
Sbjct:  318 GEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGHVG 408          

HSP 2 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G    ++ +NQ+LTEMDG      + +I ATNR DI+D A+LRPGR D+ + + +PD + R  ILK +        DV +D +A  T GFSG
Sbjct:  593 GGGAADRVINQILTEMDGMSIKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMAILKANLRKSPVAKDVDVDFLAKMTNGFSG 684          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: YB7A_SCHPO (Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe GN=SPBC16E9.10c PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 2
Query:    5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAM--RTPGFSG 277
            ++   + +N LLTE+DG    +G+ VIAATNR DI+D A+LRPGR D+ + VD+PD   R EILK          +V+LDV+    R   FSG
Sbjct:  606 SEASSRVVNTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFSG 698          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGK 418
            G+ E ++T+ +LL ++DGFE +  I +I ATNR DILD ALLRPGR DR++    P +  R EIL++H         ++L  +A +  G SG               R  +  ++ ++ + ++ +++   + T ++  K
Sbjct:  264 GDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQETAISVAK 402          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G+ E ++T+ +LL ++DGFE    I VI ATNR DILD ALLRPGR DR++    P    R EIL++H  +      + L  IA +  G SG
Sbjct:  262 GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASG 353          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 47/147 (31.97%), Postives = 73/147 (49.66%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYH 442
            G+ E ++T+ +LL ++DGF  +  I VIAATNRADILD AL+R GR DR++    P    R  IL++H      + DV+ + +A  T  F+G               RR    ++ ++ +          EG +    K KS + Y+
Sbjct:  292 GDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFN----------EGIIQVQAKKKSSLNYY 428          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NSF_ARATH (Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSG 277
            G    +  +NQLLT++DG E    +++I  TNR D+LD ALLRPGR + QV + +PD  GR +IL++H +  K       D++L  +A RT  +SG
Sbjct:  340 GTGVHDSIVNQLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQELAARTKNYSG 435          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: TERA_DROME (Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila melanogaster GN=TER94 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  ER + ++QLLT MDG + ++ +IV+AATNR + +D AL R GRFDR++ + +PD  GR E+L++H  N K   DV L+ IA  + G  G
Sbjct:  315 GEVER-RIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLHDDVDLEQIAAESHGHVG 405          

HSP 2 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            ++ +NQ+LTEMDG      + +I ATNR DI+D A+LRPGR D+ + + +PD + R  ILK +        +V L  IA  T GFSG
Sbjct:  595 DRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFSG 681          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 44/128 (34.38%), Postives = 70/128 (54.69%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVA 385
            G+ E ++T+ +LL ++DGF  +  I VIAATNRADILD AL+R GR DR++    P    R  IL++H      +ADV+ + +A  T  F+G               RR    ++ ++ ++ I ++ A
Sbjct:  286 GDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 413          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G    ++ LNQLLTEMDG      + +I ATNR DI+DSALLRPGR D+ + + +PD   R  I K          DV +  +A  T GFSG
Sbjct:  597 GGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSG 688          

HSP 2 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 2
Query:    5 NDEREQTL-NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            N E E+ + +QLLT MDG +    +IV+ ATNR + +D AL R GRFDR++ + VPD  GR E+L++H  N K   DV L+ I+  T G+ G
Sbjct:  320 NGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVG 411          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVA 385
            G+ E ++T+ +LL ++DGF  +  I VIAATNRADILD AL+R GR DR++    P    R  IL++H      + DV+ + +A  T  F+G               RR    ++ ++ ++ I ++ A
Sbjct:  286 GDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQA 413          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
TERA_XENLA4.075e-1547.83Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
YB7A_SCHPO5.323e-1545.16Uncharacterized AAA domain-containing protein C16E... [more]
PRS8_YEAST5.323e-1530.2226S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_SCHPO5.323e-1544.5726S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS6A_ORYSJ5.323e-1531.9726S protease regulatory subunit 6A homolog OS=Oryz... [more]
NSF_ARATH5.323e-1541.67Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=N... [more]
TERA_DROME6.952e-1545.65Transitional endoplasmic reticulum ATPase TER94 OS... [more]
PS6AB_ARATH6.952e-1534.3826S protease regulatory subunit 6A homolog B OS=Ar... [more]
CD48A_ARATH6.952e-1544.57Cell division control protein 48 homolog A OS=Arab... [more]
PRS6A_SOLLC1.549e-1433.5926S protease regulatory subunit 6A homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
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