FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVA 385
            G+ E ++T+ +LL ++DGF  +  + V+AATNR D+LD ALLR GR DR++   +P    R +IL++H      D D++   +A  T  F+G               R G++++  ++  + I  + A
Sbjct:  297 GDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQA 424          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  E ++T+ +LL ++DGF+    + VI ATNR + LD ALLRPGR DR++   +PDI+ R  I ++H S      DV+L+   M    FSG
Sbjct:  304 GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSG 395          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: CDC48_CAPAN (Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            ++ LNQLLTEMDG      + +I ATNR DI+D ALLRPGR D+ + + +PD   R +I K          D+ L  +A  T GFSG
Sbjct:  602 DRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPLSKDIDLRALAKHTQGFSG 688          

HSP 2 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  ER + ++QLLT MDG +    +IV+ ATNR + +D AL R GRFDR++ + VPD  GR E+L +H  N K   +V L+ I+  T G+ G
Sbjct:  322 GEVER-RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLGIHTKNMKLAEEVDLERISKDTHGYVG 412          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: CD48E_ARATH (Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 2
Query:    5 NDEREQTL-NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            N E E+ + +QLLT MDG +    +IV+ ATNR + +D AL R GRFDR++ + VPD  GR E+L++H  N K   DV L+ I+  T G+ G
Sbjct:  320 NGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVG 411          

HSP 2 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            ++ LNQLLTEMDG      + +I ATNR DI+DSALLRPGR D+ + + +PD   R  I K          DV +  +A  T GFSG
Sbjct:  601 DRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSG 687          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH----GSNKKFDADVSLDVIAMRTPGFSG 277
            +Q +NQLL +MDG +    I+VI  TNR D++D ALLRPGR +  + + +PD  GR +ILK+H     SN   + DV ++ +A  T  FSG
Sbjct:  399 DQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSG 489          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVA 385
            G+ E ++T+ +LL ++DGF  +  I VIAATNRADILD AL+R GR DR++    P    R  IL++H        DV+ + +A  T  F+G               RR    ++ ++ ++ I ++ A
Sbjct:  287 GDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 414          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 41/127 (32.28%), Postives = 67/127 (52.76%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIV 382
            G+ E ++T+ +LL ++DGFE    I V+  TNR DILD ALLRPGR DR++    P   GR +ILK+H         ++L  I+ +  G SG               R  +  +S ++ + ++ +++
Sbjct:  262 GDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQEDFEMAVSKVM 388          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVA 385
            G+ E ++T+ +LL ++DGF  +  I VIAATNRADILD AL+R GR DR++    P    R  IL++H        DV+ + +A  T  F+G               RR    ++ ++ ++ I ++ A
Sbjct:  287 GDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQA 414          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  ER + ++QLLT MDG +    +IV+ ATNR + +D AL R GRFDR++ + VPD  GR E+L++H  N K   DV L+ ++  T G+ G
Sbjct:  322 GEVER-RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVG 412          

HSP 2 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            ++ LNQLLTEMDG      + +I ATNR DI+D ALLRPGR D+ + + +PD   R +I K          DV L  +A  T GFSG
Sbjct:  602 DRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSG 688          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G+ E ++T+ QLL+EMDGF+    I +IAATNR D+LD A+LRPGRFDR + V  P++ GR +I ++H         V    +A  T   SG
Sbjct:  265 GDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVADSVDFGELAADTGDLSG 356          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
PRS6A_YEAST2.023e-1431.2526S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS4A_ARATH2.023e-1442.3926S proteasome regulatory subunit 4 homolog A OS=A... [more]
CDC48_CAPAN2.023e-1444.83Cell division cycle protein 48 homolog OS=Capsicum... [more]
CD48E_ARATH2.023e-1445.65Cell division control protein 48 homolog E OS=Arab... [more]
SEC18_SCHPO2.642e-1443.96Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
PS6AA_ARATH2.642e-1433.5926S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS8_DICDI2.642e-1432.2826S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS6A_BRACM2.642e-1433.5926S protease regulatory subunit 6A homolog OS=Bras... [more]
CD48D_ARATH2.642e-1444.57Cell division control protein 48 homolog D OS=Arab... [more]
PSMR2_HALSA3.450e-1444.57Proteasome-activating nucleotidase 2 OS=Halobacter... [more]

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Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
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