FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NVL_DICDI (Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 43/94 (45.74%), Postives = 55/94 (58.51%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIA--MRTPGFSG 277
            GN   E+ +NQLLTEMDG E  + + +IAATNR DI+D+A+ RPGR D+ V V +P    R EILK          DV L  +   +R   FSG
Sbjct:  682 GNQATERVVNQLLTEMDGLEKRSEVFIIAATNRPDIIDAAMCRPGRLDKMVYVPLPSPEERCEILKTLTHKIPIHQDVDLIKVGTDLRCHSFSG 775          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PEX1_YEAST (Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae GN=PEX1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV-------HGSNKKF--DADVSLDVIAMRTPGFSG 277
            ++ +NQLLT+MDG EG  G+ ++AAT+R D++DSALLRPGR D+ V  ++P    R +IL+            KKF  + +  L +IA +T GFSG
Sbjct:  815 DRVVNQLLTQMDGAEGLDGVYILAATSRPDLIDSALLRPGRLDKSVICNIPTESERLDILQAIVNSKDKDTGQKKFALEKNADLKLIAEKTAGFSG 910          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: SEC18_CANAL (Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH----GSNKKFDADVSLDVIAMRTPGFSG 277
            G    +  +NQLL++MDG +    I+VI  TNR D++D+ALLRPGRF+ Q+ + +PD +GR +I  +H      N    +DV+ D ++  T  F+G
Sbjct:  401 GTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLPDEKGRKDIFLIHTKKLTENGILSSDVNFDELSTLTKNFTG 496          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E ++TL +LL ++DGF+    + +I ATNR D+LD ALLRPGR DR++ + +P+ + R EILK+H S      ++  + I     GF+G
Sbjct:  258 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNG 346          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSG 277
            +  +NQLL+++DG E    I+VI  TNR D++D ALLRPGR + ++ + +PD +GR +IL +H +  +      ADV +  +AM T  FSG
Sbjct:  348 DTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAMETKNFSG 438          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: TBP7_CAEEL (TAT-binding homolog 7 OS=Caenorhabditis elegans GN=lex-1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 2
Query:   26 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--SLDVIAMRTPGFSG 277
            ++ LL  MDG +G   ++VI ATNR D LD AL RPGRFDR++   +PD+  R +IL +H S  + +  +  +LD IA RT G+ G
Sbjct:  517 VSTLLALMDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCG 602          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E ++TL +LL +MDGF+    + +I ATNR D LD ALLRPGR DR++ +D+P+ + R +ILK+H        ++  + I   + GF+G
Sbjct:  252 EIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNG 340          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E ++TL +LL +MDGF+    + +I ATNR D LD ALLRPGR DR++ +D+P+ + R +ILK+H        ++  + I   + GF+G
Sbjct:  252 EIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNG 340          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E ++TL +LL +MDGF+    + +I ATNR D LD ALLRPGR DR++ +D+P+ + R +ILK+H        ++  + I   + GF+G
Sbjct:  252 EIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNG 340          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E ++TL +LL +MDGF+    + +I ATNR D LD ALLRPGR DR++ +D+P+ + R +ILK+H        ++  + I   + GF+G
Sbjct:  252 EIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNG 340          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
NVL_DICDI5.885e-1445.74Putative ribosome biogenesis ATPase nvl OS=Dictyos... [more]
PEX1_YEAST7.686e-1443.75Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisia... [more]
SEC18_CANAL1.004e-1339.58Vesicular-fusion protein SEC18 OS=Candida albicans... [more]
PS10B_ARATH1.004e-1341.5726S protease regulatory subunit S10B homolog B OS=... [more]
NSF_PONAB1.004e-1341.76Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]
TBP7_CAEEL1.311e-1345.35TAT-binding homolog 7 OS=Caenorhabditis elegans GN... [more]
PRS10_SPETR1.311e-1341.5726S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE1.311e-1341.5726S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN1.311e-1341.5726S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN1.311e-1341.5726S protease regulatory subunit S10B OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
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