FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSG 277
            +  +NQLL+++DG E    I+VI  TNR D++D ALLRPGR + ++ + +PD +GR +IL +H +  +      ADV +  +A+ T  FSG
Sbjct:  348 DTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSG 438          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSG 277
            +  +NQLL+++DG E    I+VI  TNR D++D ALLRPGR + ++ + +PD +GR +IL +H +  +      ADV +  +A+ T  FSG
Sbjct:  348 DTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSG 438          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSG 277
            +  +NQLL+++DG E    I+VI  TNR D++D ALLRPGR + ++ + +PD +GR +IL +H +  +      ADV +  +A+ T  FSG
Sbjct:  348 DTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSG 438          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSG 277
            +  +NQLL+++DG E    I+VI  TNR D++D ALLRPGR + ++ + +PD +GR +IL +H +  +      ADV +  +A+ T  FSG
Sbjct:  348 DTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSG 438          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: SPA5L_HUMAN (Spermatogenesis-associated protein 5-like protein 1 OS=Homo sapiens GN=SPATA5L1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 2
Query:   32 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            Q+LT +DG  G+  ++V+ ATNR D LD AL RPGRFDR+V +  P ++ R EIL+V  S     + V L ++A  T G+ G
Sbjct:  324 QVLTLLDGASGDREVVVVGATNRPDALDPALRRPGRFDREVVIGTPTLKQRKEILQVITSKMPISSHVDLGLLAEMTVGYVG 405          

HSP 2 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDG-----------------FEG--NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G D +E+ L+ LL E+DG                 F+   N  +++IAATNR D+LD+ALLRPGR D+ + +  PD +GR  ILKV         DVSL+ +A  T  FSG
Sbjct:  579 GCDVQERVLSVLLNELDGVGLKTIERRGSKSSQQEFQEVFNRSVMIIAATNRPDVLDTALLRPGRLDKIIYIPPPDHKGRLSILKVCTKTMPIGPDVSLENLAAETCFFSG 689          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFS 274
            G+ E ++T+ +LL ++DGF+ N  + VIAATNR DILD ALLR GR DR++   +P+   R  I+++H        DV+ + +A R P  S
Sbjct:  286 GDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELA-RCPTIS 375          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  E ++T+ +LL ++DGF+    + VI ATNR + LD AL+RPGR DR++   +PD + +  I ++H S      DV+LD + M     SG
Sbjct:  301 GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSG 392          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRTPGFSG 277
            +  +NQLL ++DG E    I+VI  TNR D++D ALLRPGR + Q+ + +P+ +GR +IL +H        K  +DV  + IA +T  FSG
Sbjct:  353 DTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMRDFNKIASDVDNNEIAAKTKNFSG 443          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: SPA5L_BOVIN (Spermatogenesis-associated protein 5-like protein 1 OS=Bos taurus GN=SPATA5L1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 2
Query:   65 NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            N+ +IV+AATNR D+LD ALLRPGR D+ + +  PD +GR  ILKV   N     DVSL+ +A  T  FSG
Sbjct:  633 NSNVIVVAATNRPDVLDDALLRPGRLDKIIYIPPPDEKGRLSILKVCTKNTPMGPDVSLEKVAAETCFFSG 703          

HSP 2 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 2
Query:   32 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            Q+LT +DG   +  ++V+ +TNR D LD AL RPGRFDR+V +  P +R R  IL+V  S       V L+++A  T G+ G
Sbjct:  326 QVLTLLDGIGEDREVVVVGSTNRPDALDPALRRPGRFDREVVIGTPTLRQRKAILQVITSKMPISGQVDLNLLAEMTVGYVG 407          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  E ++T+ +LL ++DGF+    + VI ATNR + LD AL+RPGR DR++   +PD + +  I ++H S      DV+LD + M     SG
Sbjct:  301 GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSG 392          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
NSF_RAT2.921e-1340.66Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]
NSF_MOUSE2.921e-1340.66Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN2.921e-1340.66Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR2.921e-1340.66Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]
SPA5L_HUMAN4.982e-1345.12Spermatogenesis-associated protein 5-like protein ... [more]
PR6AA_XENLA6.507e-1341.7626S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PRS4_CHICK8.498e-1339.1326S protease regulatory subunit 4 OS=Gallus gallus... [more]
NSF2_DROME8.498e-1341.76Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
SPA5L_BOVIN1.110e-1252.11Spermatogenesis-associated protein 5-like protein ... [more]
PRS4_RAT1.110e-1239.1326S protease regulatory subunit 4 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
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