FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  E ++T+ +LL ++DGF+    + VI ATNR + LD AL+RPGR DR++   +PD + +  I ++H S      DV+LD + M     SG
Sbjct:  301 GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSG 392          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  E ++T+ +LL ++DGF+    + VI ATNR + LD AL+RPGR DR++   +PD + +  I ++H S      DV+LD + M     SG
Sbjct:  301 GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSG 392          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NVL_MOUSE (Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 2
Query:   20 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV---HGSNKKFDADVSLDVIA 253
            + +NQLLTEMDG E    + ++AATNR DI+D A+LRPGR D+ + V +P    R  ILK    +G+    D DV+L+ IA
Sbjct:  699 RVVNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIA 779          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 2
Query:   11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E ++TL +LL +MDGF+      +I ATNR D LD ALLRPGR DR++ + +P+  GR EILK+H        ++  + +   T G +G
Sbjct:  251 EIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNG 339          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 36/127 (28.35%), Postives = 67/127 (52.76%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIV 382
            G  E ++T+ +LL ++DGF+    + VI ATN+ + LD AL+RPGR DR++  + PD+  + +IL +H S      DV+L+ +       SG               R  +  +++++   + +R++
Sbjct:  298 GEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVM 424          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRTPGFSG 277
            GN  R+  +NQ L EMDG E    +I I  TNR ++LD A +R GRF   + +D+PD  GR +I ++H        +   DV +  +A+ T  FSG
Sbjct:  694 GNPVRDSVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGRFGIHIKIDLPDQEGRVKIFQIHTKKLQELNRLSDDVDISKLAVITEEFSG 789          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSG 277
            +  +NQLL  +DG E    I+VI  TNR D++D ALLRPGR +  V + +PD  GR +I K+H +  +     D DV+L   A  T  +SG
Sbjct:  352 DSVVNQLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSG 442          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRTPGFSG 277
            +  +NQLLT++DG +    I+VI  TNR D++D ALLRPGR + Q+ + +P+ +GR +IL +H        K + DV    IA  T  FSG
Sbjct:  348 DTVVNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNFSG 438          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: TBP7_CAEBR (TAT-binding homolog 7 OS=Caenorhabditis briggsae GN=lex-1 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 2
Query:   26 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS--NKKFDADVSLDVIAMRTPGFSG 277
            ++ LL  MDG +G   ++VI ATNR D LD AL RPGRFDR++   +PD+  R  IL +H S   +      +LD IA +T G+ G
Sbjct:  531 VSTLLALMDGLDGRGEVVVIGATNRLDSLDPALRRPGRFDRELRFSLPDLNARRHILDIHTSKWEENKPTPETLDGIAEKTSGYCG 616          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  E ++T+ +LL ++DGF+    + VI ATNR + LD AL+RPGR DR++   +PD + +  I  +H S      DV+L  + M     SG
Sbjct:  300 GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSG 391          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
PRS4_MOUSE1.110e-1239.1326S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN1.110e-1239.1326S protease regulatory subunit 4 OS=Homo sapiens ... [more]
NVL_MOUSE1.110e-1246.91Nuclear valosin-containing protein-like OS=Mus mus... [more]
PRS10_SCHPO1.450e-1241.57Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS4_YEAST1.893e-1228.3526S protease regulatory subunit 4 homolog OS=Sacch... [more]
YR476_MIMIV2.472e-1238.54Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]
NSF_DICDI2.472e-1241.76Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]
NSF1_DROME2.472e-1241.76Vesicle-fusing ATPase 1 OS=Drosophila melanogaster... [more]
TBP7_CAEBR3.229e-1244.19TAT-binding homolog 7 OS=Caenorhabditis briggsae G... [more]
PRS4_DROME5.508e-1238.0426S protease regulatory subunit 4 OS=Drosophila me... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
back to top