FC868542
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12 Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = 2 Query: 2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277 G E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + + I ++H S DV+LD + M SG Sbjct: 301 GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSG 392
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12 Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = 2 Query: 2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277 G E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + + I ++H S DV+LD + M SG Sbjct: 301 GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSG 392
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NVL_MOUSE (Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12 Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 2 Query: 20 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV---HGSNKKFDADVSLDVIA 253 + +NQLLTEMDG E + ++AATNR DI+D A+LRPGR D+ + V +P R ILK +G+ D DV+L+ IA Sbjct: 699 RVVNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIA 779
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12 Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 2 Query: 11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277 E ++TL +LL +MDGF+ +I ATNR D LD ALLRPGR DR++ + +P+ GR EILK+H ++ + + T G +G Sbjct: 251 EIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNG 339
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12 Identity = 36/127 (28.35%), Postives = 67/127 (52.76%), Query Frame = 2 Query: 2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIV 382 G E ++T+ +LL ++DGF+ + VI ATN+ + LD AL+RPGR DR++ + PD+ + +IL +H S DV+L+ + SG R + +++++ + +R++ Sbjct: 298 GEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVM 424
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12 Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 2 Query: 2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRTPGFSG 277 GN R+ +NQ L EMDG E +I I TNR ++LD A +R GRF + +D+PD GR +I ++H + DV + +A+ T FSG Sbjct: 694 GNPVRDSVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGRFGIHIKIDLPDQEGRVKIFQIHTKKLQELNRLSDDVDISKLAVITEEFSG 789
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12 Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 2 Query: 17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSG 277 + +NQLL +DG E I+VI TNR D++D ALLRPGR + V + +PD GR +I K+H + + D DV+L A T +SG Sbjct: 352 DSVVNQLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSG 442
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12 Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 2 Query: 17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRTPGFSG 277 + +NQLLT++DG + I+VI TNR D++D ALLRPGR + Q+ + +P+ +GR +IL +H K + DV IA T FSG Sbjct: 348 DTVVNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNFSG 438
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: TBP7_CAEBR (TAT-binding homolog 7 OS=Caenorhabditis briggsae GN=lex-1 PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12 Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 2 Query: 26 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS--NKKFDADVSLDVIAMRTPGFSG 277 ++ LL MDG +G ++VI ATNR D LD AL RPGRFDR++ +PD+ R IL +H S + +LD IA +T G+ G Sbjct: 531 VSTLLALMDGLDGRGEVVVIGATNRLDSLDPALRRPGRFDRELRFSLPDLNARRHILDIHTSKWEENKPTPETLDGIAEKTSGYCG 616
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12 Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 2 Query: 2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277 G E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + + I +H S DV+L + M SG Sbjct: 300 GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSG 391 The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 256
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bpback to top |