FC868542
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 6.671e-42 Identity = 95/214 (44.39%), Postives = 129/214 (60.28%), Query Frame = 2 Query: 20 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658 QT+ QLL EMDGF+ N G+I+I ATN + LD+AL+RPGRFD QVTV PD++GRTEILK + + KFD V ++IA T GFSG GK ++ KE++ S D+I+ G E +V D K+K++ AYHE GHAI T P+ K T++PRG G +P +D + QL A++ +GGR AEE+IFG +T Sbjct: 400 QTIIQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNEIRAQLLAQMDVSMGGRVAEELIFGTDHIT 613
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.311e-41 Identity = 96/214 (44.86%), Postives = 126/214 (58.88%), Query Frame = 2 Query: 23 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658 TLNQLL E+DGF+ N GIIVIAATN LD AL+RPGRFDR + V PD+ GR +IL+ H DV L +IA TPGFSG G A++ +++ + DRI+ G E V++D +S+ L AYHE GHA+ T G PV K T+VPRG+ G+ +P D T S++Q+ A + + GR AEE+IFG EVT Sbjct: 342 TLNQLLVELDGFKQNEGIIVIAATNFPQSLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMLKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYAKDRIMMGSERKSAVISD-ESRKLTAYHEGGHALVAIHTEGARPVHKATIVPRGRTLGMVSQLPEKDETSFSRKQMLAWLDVSMAGRVAEELIFGDSEVT 554
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 9.633e-41 Identity = 94/223 (42.15%), Postives = 131/223 (58.74%), Query Frame = 2 Query: 5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658 NDERE TLNQLL EMDGF + I+V A TNR D+LD ALLRPGRFDRQ+T+D PDI GR +I KVH K A ++D+IA R T GF+G R + + +I+R+ AG+E + + + K+ VA+HE GHA+ G DP+ KV+++PR QA G ++P D L+S+ Q+ ++ L GR +EE+ FG ++T Sbjct: 413 NDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVH--LKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVAHHEAGHAVAGWFMEYVDPLLKVSIIPRAQALGYASYLPKDQ-YLMSRGQILDQMGMALAGRVSEEIFFGPEKIT 632
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 9.633e-41 Identity = 95/226 (42.04%), Postives = 133/226 (58.85%), Query Frame = 2 Query: 5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDV------IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658 NDERE TLNQLL EMDGF + ++V+A TNR D+LD+AL+RPGRFDR + +D PD+ GR +I VH D ++ D+ +A TPGF+G R I+ + +I+R++AG+E T + + K VAYHE GHA+CG DP+ KV+++PRGQ A G ++P D LIS++Q R++ LGGR +EE+ F P VT Sbjct: 406 NDEREATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACNEAALIAARHNDPYITIHHFEQAIERVIAGLEKKTRVLSKEEKRSVAYHEAGHAVCGWFLKYADPLLKVSIIPRGQGALGYAQYLPPDQ-YLISEEQFRHRMIMALGGRVSEELHF--PSVT 628
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2) HSP 1 Score: 164.081 bits (414), Expect = 6.244e-40 Identity = 93/222 (41.89%), Postives = 131/222 (59.01%), Query Frame = 2 Query: 5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--SLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658 NDERE TLNQ+L EMDGF ++V+A TNR DILD ALLRPGRFDR + +D P++ GR I VH + K ++ + +A TPGFSG R + A+ + +I+R++ G+E + + + K +VAYHE GHA+CG DP+ KV+++PRGQ A G ++P D L+++QQL R+ LGGR +EE+ F P VT Sbjct: 465 NDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQAIERVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPG-DIFLLTEQQLKDRMTMSLGGRVSEELHF--PSVT 683
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38 Identity = 88/216 (40.74%), Postives = 125/216 (57.87%), Query Frame = 2 Query: 17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658 +QTLNQLL E+DGF +GII+I ATN + LD AL RPGRFD+ V VD+PD+RGR +ILK H +V +IA TPG SG ++ ++ + + D+I+ G E V+TD K+ A+HE GHAI T G P+ K T++PRG+A G+T+ +P D I+K++ AR+ +GG+ AEE+I+G T Sbjct: 398 KQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQKNAVSVDMSHFEWAKDKILMGAERKTMVLTDAARKA-TAFHEAGHAIMAKYTNGATPLYKATILPRGRALGITFQLPEMDKVDITKRECQARLDVCMGGKIAEELIYGKDNTT 612
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 2.900e-37 Identity = 80/213 (37.56%), Postives = 123/213 (57.75%), Query Frame = 2 Query: 20 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658 QT+NQLL EMDGF+ GIIV+ ATN+A++LD ALLRPGRFD Q+ V P GR +L ++ K +++ ++ +A T G++G R + + D+ DR++ G D ++ + A+HE GHA+ LT P+ KVT++PRG+A GLT F+ D + +++ QL A++ +GGR EE++FG +VT Sbjct: 285 QTINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAAIAAALRNDPFVEMHHLWDARDRLIMGPAKRRPLDDQTNRVSAFHEAGHALVALLTADSIPLHKVTIIPRGEAGGLTSFLQEKDISFMTRAQLLAQLDVLMGGRVGEELVFGADKVT 497
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 2.900e-37 Identity = 87/215 (40.47%), Postives = 120/215 (55.81%), Query Frame = 2 Query: 20 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658 QT+NQLL+EMDGF N GIIVIAATNR D LD ALLRPGRFD +VTV PD+ GR +I + S + V+A + GF+G ++ +D++ DR++ G G + D ++ AYHE GH + T P+ KVT++PRGQ+ G T +P D ++K Q+ A + +GGR AEE+IFG +VT Sbjct: 320 QTINQLLSEMDGFTRNEGIIVIAATNRVDDLDKALLRPGRFDVRVTVPKPDLAGRVDIFNFYLSKIVHSGGIDPKVLAKGSTGFTGADIENMVNQAALKAATDNAVEVTMAYLDEARDRVLMGPARTGGRIPDEEANRNTAYHEAGHTLVSLYTKDATPLHKVTIIPRGQSLGHTAMLPEKDSYQLTKAQMLATLDVMMGGRVAEELIFGDDKVT 534
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.920e-34 Identity = 85/216 (39.35%), Postives = 123/216 (56.94%), Query Frame = 2 Query: 5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIF 640 N E EQTLNQLL EMDG +IV+A+TNRAD+LD+AL+RPGR DR V +D+P ++ R EI + H K S +A TPGFSG R G ++ + + +++R++AG + + + + + +VA+HE GHA+ G L + V KV++ PR A G + +P D L +K+QLF R+ LGGRAAE + F Sbjct: 426 NTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTFNFEYAVERVIAGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQ-YLFTKEQLFERMCMALGGRAAEAISF 640
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2) HSP 1 Score: 141.739 bits (356), Expect = 3.318e-33 Identity = 86/222 (38.74%), Postives = 125/222 (56.31%), Query Frame = 2 Query: 5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658 N E EQTLNQLL EMDG +IV+A+TNRADILD AL+RPGR DR V +D+P ++ R EI + H + K + +A TPGFSG R G ++ + + +++R++AG + + + + + +VA+HE GHA+ G + + V KV++ PR A G +P D L +K+QLF R+ LGGRA+E + F EVT Sbjct: 426 NTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKILSKEEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAALGFAQMLPRDQ-HLFTKEQLFERMCMALGGRASEALSFN--EVT 644 The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 256
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bpback to top |