FC868543

Overview
NameFC868543
Unique NameFC868543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig950 contig Ccv1_Contig950:9..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_SPISO (Ribonucleoside-diphosphate reductase small chain OS=Spisula solidissima PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 7.961e-41
Identity = 77/110 (70.00%), Postives = 91/110 (82.73%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            P+L +  +RF + PI+Y  +W+MYKKA+ASFWTAEEVDLS+D+ HWE L   EKHFISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL+
Sbjct:   63 PLLADNPRRFVVLPIQYHDIWKMYKKAEASFWTAEEVDLSKDMAHWESLKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLLI 172          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_DROME (Ribonucleoside-diphosphate reductase subunit M2 OS=Drosophila melanogaster GN=RnrS PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.040e-40
Identity = 76/110 (69.09%), Postives = 91/110 (82.73%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            P+L E  +RF +FPI+Y  +W+MYKKA+ASFWT EEVDLS+D+  W RL D E+HFISHVLAFFAASDGIV ENL  RF  ++QI EAR FYGFQIAMEN+HSEMYS+L+
Sbjct:   75 PLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLI 184          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2B_MOUSE (Ribonucleoside-diphosphate reductase subunit M2 B OS=Mus musculus GN=Rrm2b PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.316e-40
Identity = 73/110 (66.36%), Postives = 92/110 (83.64%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            P+L + ++RF +FPI+Y  +W MYK+AQASFWTAEEVDLS+D+ HW +L   EK+FISH+LAFFAASDGIV ENL  RF  ++Q+PEAR FYGFQI +EN+HSEMYSLL+
Sbjct:   33 PLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 142          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2B_PONAB (Ribonucleoside-diphosphate reductase subunit M2 B OS=Pongo abelii GN=RRM2B PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.025e-40
Identity = 73/110 (66.36%), Postives = 93/110 (84.55%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            P+L + ++RF +FPI+Y  +W+MYK+AQASFWTAEEVDLS+D+ HW +L   EK+FISH+LAFFAASDGIV ENL  RF  ++Q+PEAR FYGFQI +EN+HSEMYSLL+
Sbjct:   33 PLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 142          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2B_MACFA (Ribonucleoside-diphosphate reductase subunit M2 B OS=Macaca fascicularis GN=RRM2B PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.025e-40
Identity = 73/110 (66.36%), Postives = 93/110 (84.55%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            P+L + ++RF +FPI+Y  +W+MYK+AQASFWTAEEVDLS+D+ HW +L   EK+FISH+LAFFAASDGIV ENL  RF  ++Q+PEAR FYGFQI +EN+HSEMYSLL+
Sbjct:   33 PLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 142          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2B_HUMAN (Ribonucleoside-diphosphate reductase subunit M2 B OS=Homo sapiens GN=RRM2B PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.025e-40
Identity = 73/110 (66.36%), Postives = 93/110 (84.55%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            P+L + ++RF +FPI+Y  +W+MYK+AQASFWTAEEVDLS+D+ HW +L   EK+FISH+LAFFAASDGIV ENL  RF  ++Q+PEAR FYGFQI +EN+HSEMYSLL+
Sbjct:   33 PLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLI 142          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_NEUCR (Ribonucleoside-diphosphate reductase small chain OS=Neurospora crassa GN=rnr-2 PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 6.740e-40
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            P+L E  QRF +FPI+Y ++W+MYKKA+ASFWTAEE+DLS+D+  W  RL D EK FISH+LAFFAASDGIV ENL  RF  ++QIPEAR FYGFQI MENIHSE YSLL+
Sbjct:   78 PLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLI 188          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_DICDI (Ribonucleoside-diphosphate reductase small subunit OS=Dictyostelium discoideum GN=rnrB-1 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.451e-39
Identity = 76/111 (68.47%), Postives = 89/111 (80.18%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            PIL E   RF +FPI+Y  +W MYKKA AS W AEE+DL  D   WE +L D+E+HFISHVLAFFAASDGIV ENLA RF++++QIPEAR FYGFQIA+ENIHSE YSLL+
Sbjct:   13 PILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYKLTDNERHFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLI 123          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_SWPVK (Ribonucleoside-diphosphate reductase small chain OS=Swinepox virus (strain Kasza) GN=C14L PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.271e-38
Identity = 73/110 (66.36%), Postives = 89/110 (80.91%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            PIL E + RF +FPI+Y  +W+MYK++ ASFWT EEVDLS+D+  W++L   EK+FI H+LAFFA+SDGIV ENLA RF  D+Q  EAR FYGFQIAMENIHSEMYSLL+
Sbjct:    3 PILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDWDKLTKDEKYFIKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLI 112          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_VACCA (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Ankara) GN=MVA032L PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.168e-38
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            PIL     RF +FPI+Y  +W MYKKA+ASFWT EEVD+S+D+  W +L   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGFQ+A+ENIHSEMYSLL+
Sbjct:    3 PILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLI 112          
The following BLAST results are available for this feature:
BLAST of FC868543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RIR2_SPISO7.961e-4170.00Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_DROME1.040e-4069.09Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2B_MOUSE2.316e-4066.36Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2B_PONAB3.025e-4066.36Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2B_MACFA3.025e-4066.36Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2B_HUMAN3.025e-4066.36Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2_NEUCR6.740e-4069.37Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_DICDI7.451e-3968.47Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_SWPVK1.271e-3866.36Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VACCA2.168e-3866.36Ribonucleoside-diphosphate reductase small chain O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001G01EF AbioticL1 Citrus clementina cDNA clone C31001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868543 ID=FC868543; Name=FC868543; organism=Citrus clementina; type=EST; length=616bp
GATAGCCAAAGTCACTCAACAAACTGCCAAAGCAGAGGCAGGGAAACGAA
AGGCATGATCGTTCATCAGTCACTAACGATTTTGCTATCCATCAACAATT
GAAATTCTGTCCACTTGCTCTCTCTAACAAGAAGAGGTTTTTGCAGGGTT
TTATTACTTTTCTTTCTCTTCTCGCCACAAATAACAAAAACAGAACTTGT
GAGGAAAAATGGGTTCCTTGAAAAACGAAACAGAGAATGAAGTAAACCAA
CGTGAGCAGGGAGAACAAGAACAGGAAGACCAAGAGCCAATATTAATGGA
GCAAAACCAGAGGTTTTGTATGTTCCCCATAAGGTACAAGCAAGTTTGGG
AGATGTACAAGAAGGCTCAAGCCAGTTTCTGGACCGCCGAGGAGGTTGAT
CTTTCCCAGGATGTACAGCACTGGGAACGACTATTGGATTCTGAGAAACA
CTTTATAAGCCATGTGTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTT
TGGAAAATTTGGCTGCAAGGTTCCTAAATGACATTCAAATTCCAGAGGCT
CGAGCATTTTATGGATTTCAAATAGCAATGGAGAATATTCATTCTGAGAT
GTACAGCTTGCTTCTG
back to top