FC868543

Overview
NameFC868543
Unique NameFC868543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_VARV (Ribonucleoside-diphosphate reductase small chain OS=Variola virus GN=F4L PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.832e-38
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            PIL +   RF +FPI+Y  +W MYKKA+ASFWT EEVD+S+D+  W +L   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGFQ+A+ENIHSEMYSLL+
Sbjct:    3 PILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLI 112          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_VACCW (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Western Reserve) GN=VACWR043 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.832e-38
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            PIL     RF +FPI+Y  +W MYKKA+ASFWT EEVD+S+D+  W +L   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGFQ+A+ENIHSEMYSLL+
Sbjct:    3 PILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLI 112          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_VACCC (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Copenhagen) GN=F4L PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.832e-38
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            PIL     RF +FPI+Y  +W MYKKA+ASFWT EEVD+S+D+  W +L   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGFQ+A+ENIHSEMYSLL+
Sbjct:    3 PILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLI 112          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_TRYBB (Ribonucleoside-diphosphate reductase small chain OS=Trypanosoma brucei brucei GN=RNR2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.698e-38
Identity = 69/110 (62.73%), Postives = 88/110 (80.00%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            P+L E   R+ +FPI+Y  +W+ YK+A++S WT EE+DL  D+  WE+L D E+HFI HVLAFFAASDGIVLENLA RF+ ++Q+PE R FYGFQIAMENIHSE YS+L+
Sbjct:   18 PLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEKLDDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLI 127          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_PLAF4 (Ribonucleoside-diphosphate reductase small chain OS=Plasmodium falciparum (isolate Dd2) GN=RNR2 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.308e-38
Identity = 72/109 (66.06%), Postives = 93/109 (85.32%), Query Frame = 2
Query:  290 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            IL +++ RF ++PI Y  VW+ YKKA+ASFWTAEE+DLS D++ +E+L ++EKHFI HVLAFFAASDGIVLENLA++FL ++QI EA+ FY FQIA+ENIHSE YSLL+
Sbjct:   33 ILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLI 141          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_YLDV (Ribonucleoside-diphosphate reductase small chain OS=Yaba-like disease virus GN=20L PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.239e-38
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            PIL     ++ +FPI Y+ +W+MYKKA ASFWT EEVDLS+D   W +L D+EK+FI H+LAFFAASDGIV ENLA RF +++QI EAR FYGFQIAMENIHSEMYSLL+
Sbjct:    7 PILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLKLSDNEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLI 116          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_VACCP (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain L-IVP) GN=F14 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.405e-37
Identity = 71/110 (64.55%), Postives = 87/110 (79.09%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            PIL     RF +FPI+Y  +W MYKKA+ASFWT EEVD+S+D+  W ++   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGF++A+ENIHSEMYSLL+
Sbjct:    3 PILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKVTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFRMAIENIHSEMYSLLI 112          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_LEIAM (Ribonucleoside-diphosphate reductase small subunit OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.930e-35
Identity = 64/110 (58.18%), Postives = 84/110 (76.36%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            P+  E   R+ +FPI+Y  +W  YK+ ++  WT EE+DL  D++ W  L D E+HFI HVLAFFA SDGIV+ENLA RF++D+++PEARAFYGFQ+ MENIHSE YS+LL
Sbjct:   26 PLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLL 135          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_YEAST (Ribonucleoside-diphosphate reductase small chain 1 OS=Saccharomyces cerevisiae GN=RNR2 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 6.528e-35
Identity = 67/111 (60.36%), Postives = 89/111 (80.18%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            P+L E  +R  +FPI+Y ++W+ YK+A+ASFWTAEE+DLS+D+  W  R+ ++E+ FIS VLAFFAASDGIV ENL   F  ++QIPEA++FYGFQI +ENIHSE YSLL+
Sbjct:   77 PLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLI 187          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_CAEEL (Ribonucleoside-diphosphate reductase small chain OS=Caenorhabditis elegans GN=rnr-2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.528e-35
Identity = 66/110 (60.00%), Postives = 86/110 (78.18%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            P+L + + RF +FP+++  +W  YKKA ASFWT EEVDL +D+  WE++   E++FIS +LAFFAASDGIV ENL  RF N++Q+ EAR FYGFQIA+ENIHSEMYS L+
Sbjct:   63 PMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNGDEQYFISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLI 172          
The following BLAST results are available for this feature:
BLAST of FC868543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RIR2_VARV2.832e-3866.36Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VACCW2.832e-3866.36Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VACCC2.832e-3866.36Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_TRYBB3.698e-3862.73Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_PLAF46.308e-3866.06Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_YLDV8.239e-3867.27Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VACCP1.405e-3764.55Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_LEIAM2.930e-3558.18Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_YEAST6.528e-3560.36Ribonucleoside-diphosphate reductase small chain 1... [more]
RIR2_CAEEL6.528e-3560.00Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionC31001G01EF AbioticL1 Citrus clementina cDNA clone C31001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868543 ID=FC868543; Name=FC868543; organism=Citrus clementina; type=EST; length=616bp
GATAGCCAAAGTCACTCAACAAACTGCCAAAGCAGAGGCAGGGAAACGAA
AGGCATGATCGTTCATCAGTCACTAACGATTTTGCTATCCATCAACAATT
GAAATTCTGTCCACTTGCTCTCTCTAACAAGAAGAGGTTTTTGCAGGGTT
TTATTACTTTTCTTTCTCTTCTCGCCACAAATAACAAAAACAGAACTTGT
GAGGAAAAATGGGTTCCTTGAAAAACGAAACAGAGAATGAAGTAAACCAA
CGTGAGCAGGGAGAACAAGAACAGGAAGACCAAGAGCCAATATTAATGGA
GCAAAACCAGAGGTTTTGTATGTTCCCCATAAGGTACAAGCAAGTTTGGG
AGATGTACAAGAAGGCTCAAGCCAGTTTCTGGACCGCCGAGGAGGTTGAT
CTTTCCCAGGATGTACAGCACTGGGAACGACTATTGGATTCTGAGAAACA
CTTTATAAGCCATGTGTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTT
TGGAAAATTTGGCTGCAAGGTTCCTAAATGACATTCAAATTCCAGAGGCT
CGAGCATTTTATGGATTTCAAATAGCAATGGAGAATATTCATTCTGAGAT
GTACAGCTTGCTTCTG
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