FC868543

Overview
NameFC868543
Unique NameFC868543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_PLAFG (Ribonucleoside-diphosphate reductase small subunit OS=Plasmodium falciparum (isolate FCR-3 / Gambia) GN=RNR2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.526e-35
Identity = 69/109 (63.30%), Postives = 88/109 (80.73%), Query Frame = 2
Query:  290 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            IL +++ RF ++PI Y  V+  YKKA+A FWTAEE+D S D++ +E+L ++EKHFI HVLAFFAASDGIVLENLA  FL ++QI EA+ FY FQIA+ENIHSE YSLL+
Sbjct:    4 ILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLI 112          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_SCHPO (Ribonucleoside-diphosphate reductase small chain OS=Schizosaccharomyces pombe GN=suc22 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.526e-34
Identity = 68/110 (61.82%), Postives = 88/110 (80.00%), Query Frame = 2
Query:  290 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDS-EKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            +L     RF +FPI+Y ++W+ YKKA+ASFWTAEE+DLS+D+  W+  L++ E++FIS VLA+FAASDGIV ENL  RF +++QIPEAR  YGFQI +ENIHSE YSLLL
Sbjct:   68 VLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNKLNADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLL 177          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_ENCCU (Ribonucleoside-diphosphate reductase small chain OS=Encephalitozoon cuniculi GN=ECU06_0730 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.678e-33
Identity = 64/109 (58.72%), Postives = 85/109 (77.98%), Query Frame = 2
Query:  290 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            +L  + +RF + PI+Y  +W+MYKKA++SFWT EEV L +D+  W +L   E+HFIS+VLAFFAASDGIV  NL  RF  ++++ EAR FYGFQ+A+ENIHSEMYSLL+
Sbjct:   10 LLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDWGKLNAKERHFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLI 118          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_RSIV (Ribonucleoside-diphosphate reductase small chain OS=Red sea bream iridovirus GN=RR-2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.531e-28
Identity = 58/93 (62.37%), Postives = 76/93 (81.72%), Query Frame = 2
Query:  344 VWEMYKKAQASFWTAEEVDLSQDVQHW-ERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI-QIPEARAFYGFQIAMENIHSEMYSLLL 616
            +W MYKKA ASFWT EEVDLS DV+HW ++L ++E+ F+SH+LAFFA +DGIV +NL   F  ++  IPEARAFYGFQ+A+ENIH+EMY+ L+
Sbjct:   13 LWAMYKKAVASFWTVEEVDLSTDVRHWTDKLTEAERRFMSHILAFFAMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLI 105          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR4_YEAST (Ribonucleoside-diphosphate reductase small chain 2 OS=Saccharomyces cerevisiae GN=RNR4 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.836e-27
Identity = 52/109 (47.71%), Postives = 82/109 (75.23%), Query Frame = 2
Query:  290 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            +LME ++RF MFPI+Y ++W  YKK +ASFWTAEE++L++D + +++L D +K +I ++LA   +SD +V + L   F   +Q PE ++FYGFQI MENI+SE+YS+++
Sbjct:   27 LLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMV 135          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_MIMIV (Ribonucleoside-diphosphate reductase small chain OS=Acanthamoeba polyphaga mimivirus GN=RNR2 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.458e-26
Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = 2
Query:  287 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWER-LLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 616
            PIL  +++++ + PI+Y++VW+ YK    ++WT EEVDL++DV  W   L D +++FI HVLAFFAA+DGIV  N+    ++ ++I EA   YGFQ AMEN H EMYSL+L
Sbjct:  100 PILSLKSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDWNNHLSDDDRNFIMHVLAFFAAADGIVNANIKENLIDVVKIKEAECAYGFQYAMENAHGEMYSLML 210          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_ASFM2 (Ribonucleoside-diphosphate reductase small chain OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-052 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23
Identity = 45/107 (42.06%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  290 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSL 610
            +L+E +QRF +FPI++ + W  YKK ++  WTA+EVD+ +D+  WE +   ++ F   +LAFF  +D IV+ENL   F+ +I++ E   FY  Q A E +HSE YS+
Sbjct:    4 LLIENSQRFTIFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSI 110          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_ASFWA (Ribonucleoside-diphosphate reductase small chain OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=War-054 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23
Identity = 45/107 (42.06%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  290 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSL 610
            +L+E +QRF +FPI++ + W  YKK ++  WTA+EVD+ +D+  WE +   ++ F   +LAFF  +D IV+ENL   F+ +I++ E   FY  Q A E +HSE YS+
Sbjct:    4 LLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSI 110          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_ASFP4 (Ribonucleoside-diphosphate reductase small chain OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=Pret-056 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23
Identity = 45/107 (42.06%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  290 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSL 610
            +L+E + RF +FPI++ + W  YKK ++  WTA+EVD+ +D+  WE +  S++ F   +LAFF  +D IV+ENL   F+ +I++ E   FY  Q A E +HSE YS+
Sbjct:    4 LLIENSHRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKSQREFYKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSI 110          
BLAST of FC868543 vs. ExPASy Swiss-Prot
Match: RIR2_ASFK5 (Ribonucleoside-diphosphate reductase small chain OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-056 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23
Identity = 45/107 (42.06%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  290 ILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSL 610
            +L+E +QRF +FPI++ + W  YKK ++  WTA+EVD+ +D+  WE +   ++ F   +LAFF  +D IV+ENL   F+ +I++ E   FY  Q A E +HSE YS+
Sbjct:    4 LLIEDSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSI 110          
The following BLAST results are available for this feature:
BLAST of FC868543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RIR2_PLAFG8.526e-3563.30Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_SCHPO5.526e-3461.82Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ENCCU4.678e-3358.72Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_RSIV4.531e-2862.37Ribonucleoside-diphosphate reductase small chain O... [more]
RIR4_YEAST3.836e-2747.71Ribonucleoside-diphosphate reductase small chain 2... [more]
RIR2_MIMIV1.458e-2649.55Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ASFM27.486e-2342.06Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ASFWA9.777e-2342.06Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ASFP49.777e-2342.06Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ASFK59.777e-2342.06Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionC31001G01EF AbioticL1 Citrus clementina cDNA clone C31001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868543 ID=FC868543; Name=FC868543; organism=Citrus clementina; type=EST; length=616bp
GATAGCCAAAGTCACTCAACAAACTGCCAAAGCAGAGGCAGGGAAACGAA
AGGCATGATCGTTCATCAGTCACTAACGATTTTGCTATCCATCAACAATT
GAAATTCTGTCCACTTGCTCTCTCTAACAAGAAGAGGTTTTTGCAGGGTT
TTATTACTTTTCTTTCTCTTCTCGCCACAAATAACAAAAACAGAACTTGT
GAGGAAAAATGGGTTCCTTGAAAAACGAAACAGAGAATGAAGTAAACCAA
CGTGAGCAGGGAGAACAAGAACAGGAAGACCAAGAGCCAATATTAATGGA
GCAAAACCAGAGGTTTTGTATGTTCCCCATAAGGTACAAGCAAGTTTGGG
AGATGTACAAGAAGGCTCAAGCCAGTTTCTGGACCGCCGAGGAGGTTGAT
CTTTCCCAGGATGTACAGCACTGGGAACGACTATTGGATTCTGAGAAACA
CTTTATAAGCCATGTGTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTT
TGGAAAATTTGGCTGCAAGGTTCCTAAATGACATTCAAATTCCAGAGGCT
CGAGCATTTTATGGATTTCAAATAGCAATGGAGAATATTCATTCTGAGAT
GTACAGCTTGCTTCTG
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