FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_SHIF8 (Glycogen synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_SHIDS (Glycogen synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_SHIBS (Glycogen synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_MANSM (Glycogen synthase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 53/169 (31.36%), Postives = 76/169 (44.97%), Query Frame = 1
Query:   19 VDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            +D P   A+     +   Y  +   DY DN  RF +L     E    L+         P+    V  A+DWH  L   YL    +P      AK VF IHN+AYQG FA+     + LP     + + ++ Y       +I+++KAG+  SD V  VSP YA+E  + E
Sbjct:   83 IDAPNLYAR-----EGNPYHDQWYNDYADNYKRFALLGWVGAELATGLD---------PWWMAEVVHAHDWHAGLTSAYLAYKGRP------AKSVFTIHNLAYQGLFAYHHLFEIGLPTSM-FNVNGLEFYG------QISYLKAGLYYSDAVTAVSPTYAREITTPE 224          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECOUT (Glycogen synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECOSM (Glycogen synthase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECOSE (Glycogen synthase OS=Escherichia coli (strain SE11) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECOLU (Glycogen synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECOLI (Glycogen synthase OS=Escherichia coli (strain K12) GN=glgA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECOLC (Glycogen synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GLGA_SHIF85.274e-1134.06Glycogen synthase OS=Shigella flexneri serotype 5b... [more]
GLGA_SHIDS5.274e-1134.06Glycogen synthase OS=Shigella dysenteriae serotype... [more]
GLGA_SHIBS5.274e-1134.06Glycogen synthase OS=Shigella boydii serotype 4 (s... [more]
GLGA_MANSM5.274e-1131.36Glycogen synthase OS=Mannheimia succiniciproducens... [more]
GLGA_ECOUT5.274e-1134.06Glycogen synthase OS=Escherichia coli (strain UTI8... [more]
GLGA_ECOSM5.274e-1134.06Glycogen synthase OS=Escherichia coli (strain SMS-... [more]
GLGA_ECOSE5.274e-1134.06Glycogen synthase OS=Escherichia coli (strain SE11... [more]
GLGA_ECOLU5.274e-1134.06Glycogen synthase OS=Escherichia coli O17:K52:H18 ... [more]
GLGA_ECOLI5.274e-1134.06Glycogen synthase OS=Escherichia coli (strain K12)... [more]
GLGA_ECOLC5.274e-1134.06Glycogen synthase OS=Escherichia coli (strain ATCC... [more]

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Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
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