FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECOL6 (Glycogen synthase OS=Escherichia coli O6 GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218
[Close]
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECOL5 (Glycogen synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218
[Close]
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECOK1 (Glycogen synthase OS=Escherichia coli O1:K1 / APEC GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218
[Close]
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECOHS (Glycogen synthase OS=Escherichia coli O9:H4 (strain HS) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218
[Close]
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECODH (Glycogen synthase OS=Escherichia coli (strain K12 / DH10B) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218
[Close]
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECOBW (Glycogen synthase OS=Escherichia coli (strain K12 / BW2952) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218
[Close]
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECO8A (Glycogen synthase OS=Escherichia coli O8 (strain IAI1) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218
[Close]
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECO81 (Glycogen synthase OS=Escherichia coli O81 (strain ED1a) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218
[Close]
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECO7I (Glycogen synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218
[Close]
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECO5E (Glycogen synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GLGA_ECOL65.274e-1134.06Glycogen synthase OS=Escherichia coli O6 GN=glgA P... [more]
GLGA_ECOL55.274e-1134.06Glycogen synthase OS=Escherichia coli O6:K15:H31 (... [more]
GLGA_ECOK15.274e-1134.06Glycogen synthase OS=Escherichia coli O1:K1 / APEC... [more]
GLGA_ECOHS5.274e-1134.06Glycogen synthase OS=Escherichia coli O9:H4 (strai... [more]
GLGA_ECODH5.274e-1134.06Glycogen synthase OS=Escherichia coli (strain K12 ... [more]
GLGA_ECOBW5.274e-1134.06Glycogen synthase OS=Escherichia coli (strain K12 ... [more]
GLGA_ECO8A5.274e-1134.06Glycogen synthase OS=Escherichia coli O8 (strain I... [more]
GLGA_ECO815.274e-1134.06Glycogen synthase OS=Escherichia coli O81 (strain ... [more]
GLGA_ECO7I5.274e-1134.06Glycogen synthase OS=Escherichia coli O7:K1 (strai... [more]
GLGA_ECO5E5.274e-1134.06Glycogen synthase OS=Escherichia coli O157:H7 (str... [more]

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Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
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