FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECO57 (Glycogen synthase OS=Escherichia coli O157:H7 GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECO55 (Glycogen synthase OS=Escherichia coli (strain 55989 / EAEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECO45 (Glycogen synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECO27 (Glycogen synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ECO24 (Glycogen synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_AERS4 (Glycogen synthase OS=Aeromonas salmonicida (strain A449) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 43/141 (30.50%), Postives = 66/141 (46.81%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVS 519
            Y DN  RF     AAL A   L+          +  ++V   NDWHT L+P  LK  +     ++  + V  IHN A+QG F  E F  +   A ++    +  G+        +N +K G+L +D +  VSP+YA E ++
Sbjct:  111 YGDNGERFAFFSAAALHACEQLD----------FAPEIVH-CNDWHTGLLPLLLKTRHAHNPFFQHTRSVISIHNAAFQGVFGREQFWAMPEIADYEQRISYDYGH--------VNLLKCGVLYADKINAVSPNYASELLT 232          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ACICJ (Glycogen synthase OS=Acidiphilium cryptum (strain JF-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 55/160 (34.38%), Postives = 79/160 (49.38%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            Y    G D+ DN  RF  LC+A     R           G +  D++  A+DW   L+P YL   Y+    + +   VF +HN+A+QG F     G L LPA   S+F  IDG         I ++KAG+  +D + TVSP YA E ++ +D G+ LD +
Sbjct:   96 YIASNGVDWSDNAQRFAALCRAGALLARGA--------VGGFVPDLLH-AHDWQAGLVPAYLH--YEG---HAAPPCVFTVHNLAFQGWFPAHLLGALGLPA---SAF-VIDGVE---YFGGIGFLKAGLQFADAITTVSPRYATE-IATQDGGMGLDGL 233          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_VIBF1 (Glycogen synthase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=glgA PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 45/142 (31.69%), Postives = 69/142 (48.59%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEA-PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVS 519
            Y DN  RF     A L+  P++LN             D++ V NDWHT LIP  LK  Y     Y   + V  IHN  ++G F +++   L   ++FKS F         +    ++ +KAG+  +D +  VSP+YA+E ++
Sbjct:  108 YADNGERFAFFSAATLDLLPKLLNKKP----------DIIHV-NDWHTGLIPYLLKKRYVENEFYHQTRSVLSIHNAVFKGIFHYDEIACL---SEFKSHF----VPEASISHTHVSMLKAGVQCADKINAVSPNYAKELLT 231          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_STRA5 (Glycogen synthase OS=Streptococcus agalactiae serotype V GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 48/117 (41.03%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  205 DVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            DV+ V +D+HT++IP  LK  Y     Y + + VF IHNI +QG+F  E  G L  + A+      + DG  +      +NWMKA IL SD V TVSP YA E +   + G  LD I
Sbjct:  127 DVLHV-HDYHTAMIPFLLKEKYHWIQAYNNIRAVFTIHNIEFQGQFGPEMLGDLFGVGAE-----RYEDGTLR--WNNCLNWMKAAILYSDRVTTVSPSYANE-IKTPEFGKGLDQI 234          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_STRA1 (Glycogen synthase OS=Streptococcus agalactiae serotype Ia GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 48/117 (41.03%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  205 DVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            DV+ V +D+HT++IP  LK  Y     Y + + VF IHNI +QG+F  E  G L  + A+      + DG  +      +NWMKA IL SD V TVSP YA E +   + G  LD I
Sbjct:  127 DVLHV-HDYHTAMIPFLLKEKYHWIQAYNNIRAVFTIHNIEFQGQFGPEMLGDLFGVGAE-----RYEDGTLR--WNNCLNWMKAAILYSDRVTTVSPSYANE-IKTPEFGKGLDQI 234          
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GLGA_ECO575.274e-1134.06Glycogen synthase OS=Escherichia coli O157:H7 GN=g... [more]
GLGA_ECO555.274e-1134.06Glycogen synthase OS=Escherichia coli (strain 5598... [more]
GLGA_ECO455.274e-1134.06Glycogen synthase OS=Escherichia coli O45:K1 (stra... [more]
GLGA_ECO275.274e-1134.06Glycogen synthase OS=Escherichia coli O127:H6 (str... [more]
GLGA_ECO245.274e-1134.06Glycogen synthase OS=Escherichia coli O139:H28 (st... [more]
GLGA_AERS45.274e-1130.50Glycogen synthase OS=Aeromonas salmonicida (strain... [more]
GLGA_ACICJ5.274e-1134.38Glycogen synthase OS=Acidiphilium cryptum (strain ... [more]
GLGA_VIBF16.888e-1131.69Glycogen synthase OS=Vibrio fischeri (strain ATCC ... [more]
GLGA_STRA56.888e-1141.03Glycogen synthase OS=Streptococcus agalactiae sero... [more]
GLGA_STRA16.888e-1141.03Glycogen synthase OS=Streptococcus agalactiae sero... [more]

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Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
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