FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:586..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ANAD2 (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 59/179 (32.96%), Postives = 83/179 (46.37%), Query Frame = 1
Query:   16 FVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQ-FK-SSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELD 546
            FV+HP       G     +YG   G D+ DN  RF  L +AAL  P  L L              +   NDW   L P  L+  +        A+ VF IHN+AYQG F  +    L LP + F+  + +F D         ++++MKAG+  +D + TVSP YA+E ++ E  G  LD
Sbjct:   81 FVEHPHLFGSRRG-----LYG-EGGRDHGDNAERFAFLTRAALALPAALGLRPR-----------ILHLNDWQCGLGPWLLRHEHARDPALAGARTVFTIHNLAYQGLFPKQVLPALGLPWEVFRWEAMEFFD---------QLSFMKAGLAFADALTTVSPTYAREILTPE-GGASLD 232          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ANASK (Glycogen synthase OS=Anaeromyxobacter sp. (strain K) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 59/179 (32.96%), Postives = 83/179 (46.37%), Query Frame = 1
Query:   16 FVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQ-FK-SSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELD 546
            FV+HP       G     +YG   G D+ DN  RF  L +AAL  P  L L              +   NDW   L P  L+  +        A+ VF IHN+AYQG F  +    L LP + F+  + +F D         ++++MKAG+  +D + TVSP YA+E ++ E  G  LD
Sbjct:   81 FVEHPHLFGNRRG-----LYG-EGGRDHGDNAERFAFLTRAALALPGALGLRPR-----------ILHLNDWQCGLGPWLLRHEHARDPALAGARTVFTIHNLAYQGLFPKQVLPALGLPWEVFRWEAMEFFD---------QLSFMKAGLAFADALTTVSPTYAREILTPE-GGASLD 232          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ANADE (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 59/179 (32.96%), Postives = 83/179 (46.37%), Query Frame = 1
Query:   16 FVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQ-FK-SSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELD 546
            FV+HP       G     +YG   G D+ DN  RF  L +AAL  P  L L              +   NDW   L P  L+  +        A+ VF IHN+AYQG F  +    L LP + F+  + +F D         ++++MKAG+  +D + TVSP YA+E ++ E  G  LD
Sbjct:   81 FVEHPHLFGSRRG-----LYGDG-GRDHPDNAERFAFLTRAALALPGALGLRPR-----------ILHLNDWQCGLGPWLLRHEHARDPALAGARTVFTIHNLAYQGLFPKQVLPALGLPWEVFRWEAMEFFD---------QLSFMKAGLAFADALTTVSPTYAREILTPE-GGASLD 232          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_FERNB (Glycogen synthase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  205 DVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            D+V V NDW T+LIP YLK +++   +      V  IHN+ YQG F  E      LP  +  + D I+ Y       KIN++K GI+ SD++ TVSP YA+E +  ++ G +L+ +
Sbjct:  134 DIVHV-NDWQTALIPVYLKTVFRDDPLLSKIATVLTIHNLGYQGIFEPEYLRFAGLP-DYLYNIDGIEFYG------KINFLKGGIIFSDIINTVSPTYAKE-IQQKEYGEKLEGV 240          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_CLOD6 (Glycogen synthase OS=Clostridium difficile (strain 630) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 55/165 (33.33%), Postives = 83/165 (50.30%), Query Frame = 1
Query:   61 QSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRF-AFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            +  IYG      Y D+  R+     A LEA   ++          +  DV+ + NDWHT ++P  LK  Y     YK+ K ++ IHN+ YQG F     + +L+LP ++  + D I+ Y        IN+MKAGI  +D ++TVSP YA E +     G +LD +
Sbjct:   99 RKSIYG------YGDDAERYTFFTDAVLEAISRID----------FYPDVIHI-NDWHTGMLPLILKERYATLEGYKNIKTMYTIHNLQYQGVFDKHVLYDILDLPQKYFDNGD-IEYYG------SINFMKAGINFADKIITVSPTYANE-IQTSFYGEQLDGL 238          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_GEOUR (Glycogen synthase OS=Geobacter uraniireducens (strain Rf4) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.359e-13
Identity = 49/165 (29.70%), Postives = 78/165 (47.27%), Query Frame = 1
Query:   58 TQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            ++  +YG   GE Y DN  RF   C+  L+  + ++   +           V   +DW T+LIP  L+        +    V+F IHN+AYQG FA E    + L + +  + D ++ Y       K+N MK  IL +D++ TVS  Y +E +   + G  LD +
Sbjct:   94 SRDNLYGTAAGE-YPDNHRRFAFFCRGVLDLLKKMDFRPD-----------VIHCHDWQTALIPLLLRREKGEDLFFSKTGVMFTIHNLAYQGLFAKETLAEMGLDSSY-FTIDCLEYYG------KVNLMKGAILSADLITTVSETYCRE-IQTPESGNGLDGV 238          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOMG (Glycogen synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.612e-13
Identity = 53/159 (33.33%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   70 IYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNL-PAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVS-GEDXGVE 540
            +YGP  G DY DN LRF   C++ L+  + ++   +           V   +DW ++LIP  LK        +    V+F IHN+AYQG F  +      L P+ F  S D I+ Y       +IN +K  IL +D + TVS  Y  E +S G+  G+E
Sbjct:   98 LYGPPEG-DYPDNPLRFAFFCRSVLQFLKRMDFRPD-----------VIHCHDWQSALIPIILKYELGHDPFFNRTAVIFTIHNLAYQGVFPADALAQTGLDPSLF--SVDRIEFYG------RINLLKGAILAADAITTVSETYCHEILSPGQGCGLE 236          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_CELJU (Glycogen synthase OS=Cellvibrio japonicus (strain Ueda107) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.639e-12
Identity = 59/178 (33.15%), Postives = 85/178 (47.75%), Query Frame = 1
Query:   19 VDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            VD P F A+         Y    G D+ DN LRF    +AA EA  +     N      +  D+V   NDW T LIP  L    +          +F IHN+AY+G F+++ FG LNLP  F    + ++ Y       ++++MK G+  +D + TVSP YAQE +   + G  LD +
Sbjct:   87 VDIPEFSARAGNP-----YCGADGNDWYDNHLRFYWFARAA-EAIALNQAGLN------WQPDIVH-CNDWQTGLIPALLSLHPERPA------TLFTIHNLAYRGLFSYQAFGELNLPPAF-WHHERLEFYG------QMSFMKGGLAFADFITTVSPSYAQE-IQLPEHGYGLDGL 237          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP5 (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 57/162 (35.19%), Postives = 78/162 (48.15%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSF--DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            Y    G D+ DN  RF  L +AA E  + L           +  D+V  A+DW   L   YL+   KP     +   VF +HN+A+QG+F  E  G L LP    SSF  D ++ Y        I +MKAG+  SD + TVSP YA E +   + G+ LD +
Sbjct:   99 YASPDGRDWPDNAQRFAALARAAAEIGQGL--------VPAFVPDIVH-AHDWQAGLTAAYLRYSDKP-----APATVFTVHNLAFQGQFPRELLGTLGLP---PSSFGVDGVEYYG------AIGYMKAGLQLSDRITTVSPAYALE-IQAPEAGMGLDGL 236          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPB (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 53/160 (33.12%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            Y    G+D+ DN  RF  L + A E  + L  +        +  D++  A+DW   L P YL+   KP+        VF +HN+A+QG+F  E    L LP     S D ++ Y        I +MK+G+  SD + TVSP YA E + G   G+ LD +
Sbjct:   99 YSGPDGKDWPDNAYRFAALARTAAEIGQGLVPS--------FVPDIIH-AHDWQAGLTPAYLRYSGKPQ-----PATVFTVHNLAFQGQFPRELLATLGLPPG-AFSVDGVEYYG------SIGYMKSGLQLSDRITTVSPAYALE-IQGPQAGMGLDGL 236          
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GLGA_ANAD23.303e-1332.96Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA_ANASK4.314e-1332.96Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA_ANADE4.314e-1332.96Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA_FERNB5.635e-1337.93Glycogen synthase OS=Fervidobacterium nodosum (str... [more]
GLGA_CLOD65.635e-1333.33Glycogen synthase OS=Clostridium difficile (strain... [more]
GLGA_GEOUR7.359e-1329.70Glycogen synthase OS=Geobacter uraniireducens (str... [more]
GLGA2_GEOMG9.612e-1333.33Glycogen synthase 2 OS=Geobacter metallireducens (... [more]
GLGA_CELJU1.639e-1233.15Glycogen synthase OS=Cellvibrio japonicus (strain ... [more]
GLGA_RHOP52.141e-1235.19Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_RHOPB2.797e-1233.13Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]

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Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
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