FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ACTSZ (Glycogen synthase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 58/169 (34.32%), Postives = 78/169 (46.15%), Query Frame = 1
Query:   19 VDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            +D P   A+     +   Y  +   DY DN  RF +L   A E    L+          + +  V  A+DWH  L   YL A   P      AK VF IHN+AYQG+FA      L LP       D  +     + G +I+++KAG+  SDMV TVSP YA+E  + E
Sbjct:   82 IDAPHLYAR-----EGNPYHDQWYNDYADNYKRFGLLGWVASELALGLDF---------WWQAEVVHAHDWHAGLASAYLAAKGHP------AKSVFTIHNLAYQGKFAARHLIELGLPV------DMFNVNGLELYG-EISYLKAGLFYSDMVTTVSPTYAKEITTTE 223          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_YERPY (Glycogen synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L   A E    L+          Y    V  A+DWH  L   YL A  +P      A+ VF +HN+AYQG F+ +    L+LPA+F   +  ++ Y       +I+++KAG+  +D V TVSP YA+E
Sbjct:  103 YSDNYLRFALLGWMACELACGLD---------GYWRPEVVHAHDWHAGLTCAYLAARGRP------ARSVFTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYG------QISYLKAGLFFADHVTTVSPTYAKE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_YERPS (Glycogen synthase OS=Yersinia pseudotuberculosis GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L   A E    L+          Y    V  A+DWH  L   YL A  +P      A+ VF +HN+AYQG F+ +    L+LPA+F   +  ++ Y       +I+++KAG+  +D V TVSP YA+E
Sbjct:  103 YSDNYLRFALLGWMACELACGLD---------GYWRPEVVHAHDWHAGLTCAYLAARGRP------ARSVFTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYG------QISYLKAGLFFADHVTTVSPTYAKE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_YERPP (Glycogen synthase OS=Yersinia pestis (strain Pestoides F) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L   A E    L+          Y    V  A+DWH  L   YL A  +P      A+ VF +HN+AYQG F+ +    L+LPA+F   +  ++ Y       +I+++KAG+  +D V TVSP YA+E
Sbjct:  103 YSDNYLRFALLGWMACELACGLD---------GYWRPEVVHAHDWHAGLTCAYLAARGRP------ARSVFTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYG------QISYLKAGLFFADHVTTVSPTYAKE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_YERPN (Glycogen synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L   A E    L+          Y    V  A+DWH  L   YL A  +P      A+ VF +HN+AYQG F+ +    L+LPA+F   +  ++ Y       +I+++KAG+  +D V TVSP YA+E
Sbjct:  103 YSDNYLRFALLGWMACELACGLD---------GYWRPEVVHAHDWHAGLTCAYLAARGRP------ARSVFTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYG------QISYLKAGLFFADHVTTVSPTYAKE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_YERPG (Glycogen synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L   A E    L+          Y    V  A+DWH  L   YL A  +P      A+ VF +HN+AYQG F+ +    L+LPA+F   +  ++ Y       +I+++KAG+  +D V TVSP YA+E
Sbjct:  103 YSDNYLRFALLGWMACELACGLD---------GYWRPEVVHAHDWHAGLTCAYLAARGRP------ARSVFTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYG------QISYLKAGLFFADHVTTVSPTYAKE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_YERPE (Glycogen synthase OS=Yersinia pestis GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L   A E    L+          Y    V  A+DWH  L   YL A  +P      A+ VF +HN+AYQG F+ +    L+LPA+F   +  ++ Y       +I+++KAG+  +D V TVSP YA+E
Sbjct:  103 YSDNYLRFALLGWMACELACGLD---------GYWRPEVVHAHDWHAGLTCAYLAARGRP------ARSVFTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYG------QISYLKAGLFFADHVTTVSPTYAKE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_YERPB (Glycogen synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L   A E    L+          Y    V  A+DWH  L   YL A  +P      A+ VF +HN+AYQG F+ +    L+LPA+F   +  ++ Y       +I+++KAG+  +D V TVSP YA+E
Sbjct:  103 YSDNYLRFALLGWMACELACGLD---------GYWRPEVVHAHDWHAGLTCAYLAARGRP------ARSVFTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYG------QISYLKAGLFFADHVTTVSPTYAKE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_YERPA (Glycogen synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L   A E    L+          Y    V  A+DWH  L   YL A  +P      A+ VF +HN+AYQG F+ +    L+LPA+F   +  ++ Y       +I+++KAG+  +D V TVSP YA+E
Sbjct:  103 YSDNYLRFALLGWMACELACGLD---------GYWRPEVVHAHDWHAGLTCAYLAARGRP------ARSVFTVHNLAYQGLFSADHLSELHLPAEFFQIYG-LEFYG------QISYLKAGLFFADHVTTVSPTYAKE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_DESDG (Glycogen synthase OS=Desulfovibrio desulfuricans (strain G20) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 51/145 (35.17%), Postives = 69/145 (47.59%), Query Frame = 1
Query:   94 DYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFV-ANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            DY DN  RF+  C+AA    R L            GE    V A+DW T+L+P  L    +    ++  + V  IHN+A+QGRF+   F    LP Q   S D ++ Y         N +K GI  +D V TVSP YA+E  + E
Sbjct:  107 DYFDNCERFVFFCRAAASMCRRL------------GEAPAVVHAHDWQTALLPALLYHWRRYDSFWEDTRTVMTIHNLAFQGRFSSRLFENCGLPPQ-AWSMDGVEFYG------DFNLLKGGIAYADKVTTVSPSYAREITTPE 232          
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GLGA_ACTSZ2.797e-1234.32Glycogen synthase OS=Actinobacillus succinogenes (... [more]
GLGA_YERPY3.652e-1236.23Glycogen synthase OS=Yersinia pseudotuberculosis s... [more]
GLGA_YERPS3.652e-1236.23Glycogen synthase OS=Yersinia pseudotuberculosis G... [more]
GLGA_YERPP3.652e-1236.23Glycogen synthase OS=Yersinia pestis (strain Pesto... [more]
GLGA_YERPN3.652e-1236.23Glycogen synthase OS=Yersinia pestis bv. Antiqua (... [more]
GLGA_YERPG3.652e-1236.23Glycogen synthase OS=Yersinia pestis bv. Antiqua (... [more]
GLGA_YERPE3.652e-1236.23Glycogen synthase OS=Yersinia pestis GN=glgA PE=3 ... [more]
GLGA_YERPB3.652e-1236.23Glycogen synthase OS=Yersinia pseudotuberculosis s... [more]
GLGA_YERPA3.652e-1236.23Glycogen synthase OS=Yersinia pestis bv. Antiqua (... [more]
GLGA_DESDG3.652e-1235.17Glycogen synthase OS=Desulfovibrio desulfuricans (... [more]

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Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
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