FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:586..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_GEOSF (Glycogen synthase OS=Geobacter sp. (strain FRC-32) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.770e-12
Identity = 54/168 (32.14%), Postives = 83/168 (49.40%), Query Frame = 1
Query:   58 TQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRF---AFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            ++  +YG  +GE Y DN LRF   C+  L+  + ++          Y  D++   +DW T++IP  LK        +     VF IHN+AYQG F   A  D GL   P+ F  + D ++ Y       K+N +K  IL +D++ TVS  Y +E ++ E  G  LD +
Sbjct:   94 SRDHLYGTASGE-YPDNHLRFAFFCRGVLDLLKKMD----------YRPDIIH-CHDWQTAMIPLILKKEKGDDLFFSKTGTVFTIHNLAYQGLFPKEAMVDMGL--DPSLF--TIDCLEYYG------KVNLIKGAILTADVINTVSETYCREILTPES-GDGLDGV 238          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ANATD (Glycogen synthase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12
Identity = 51/139 (36.69%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFE-DFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y D+  RF    +A  EA   L+          +  D++ V NDWHTS+IP  LKA Y     +   K +  IHN+ YQG F  E  + LL+LP ++ S  D +  Y+       I+++K GI+ SD V+TVS  YA E
Sbjct:  101 YYDDGERFSFFSRAVCEAVYHLD----------FDVDIIHV-NDWHTSVIPVLLKAHYGHSDKHNKIKTILTIHNLKYQGIFPKEVMYDLLSLPDEYFSE-DKLKFYD------AISFLKGGIIYSDKVVTVSRTYANE 221          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_CALS8 (Glycogen synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 51/141 (36.17%), Postives = 74/141 (52.48%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFE-DFGLLNLPAQF--KSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y D+  RF    +A  EA  I +L+        +  D++ V NDWHTS+IP  LKA Y     ++  K V  IHN+ YQG F  E  + LL+LP ++  ++   F D          I+++K GI+ +D V+TVS  YA E
Sbjct:  101 YYDDGERFSYFSRAVCEA--IYHLD--------FDVDIIHV-NDWHTSVIPVLLKAHYSHSPKHQKIKTVLTIHNLRYQGVFPKEVMYDLLSLPDEYFDENKLKFYDA---------ISFLKGGIIFADKVVTVSKTYANE 221          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_TREDE (Glycogen synthase OS=Treponema denticola GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 57/183 (31.15%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   16 FVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFA---FEDFGLLNLPAQFKSSFDFIDGYNKPVRG-RKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            F+DH +   +        +YG     D+ DN  RF +L  AA +  R             +  DVV  A+DW   L+P  L+   K    +K+   VF IHN+ YQG ++   F D GL           D+ D Y        +IN++KA ++ SDM+ TVSP YA+E +   + G  +D I
Sbjct:   86 FIDHEQAFGR------DGVYGSAFEPDFSDNTKRFSLLAHAAFQVCR----------KQAWIPDVVH-AHDWAAGLVPVLLRFTEK-NTEFKNTASVFTIHNMGYQGVYSKHTFPDTGL-----------DWNDFYTTGFEDWDRINFLKAALVSSDMLTTVSPSYAEE-IKRPEFGFRMDGI 238          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ERWCT (Glycogen synthase OS=Erwinia carotovora subsp. atroseptica GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 53/149 (35.57%), Postives = 71/149 (47.65%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE-TVSGEDXGVE 540
            Y DN LRF +L     E    L+          Y    +  A+DWH  L   YL A  +P      AK VF +HN+AYQG FA      L+LP+      DF   Y     G +I+++KAG+  +D + TVSP YA E T+     G+E
Sbjct:  103 YADNYLRFALLGWMGCEMACGLD---------HYWRPDIVHAHDWHAGLTCAYLAARNRP------AKSVFTVHNLAYQGLFAAGHMANLHLPS------DFFQVYGLEFYG-QISYLKAGLFYADHITTVSPTYAHEITLPAYGYGME 229          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_BORPD (Glycogen synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 50/152 (32.89%), Postives = 77/152 (50.66%), Query Frame = 1
Query:   70 IYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            +Y    G+ Y DN +RF  L  AA+     L         G    D++  A DWH  L+P  ++A     G+ +  K V  +HN+A+QG F  E  G + +P  + +     DG    + GR IN+MKAG+  +D + TVS +YA+E ++ E
Sbjct:   99 LYLDEQGQPYADNAVRFAALAHAAMRVAAGL--------PGMRRPDILH-AQDWHAGLVPLLVRAA----GL-RYVKTVLTVHNLAFQGSFELECAGQIGVPGAYCTD----DGAR--LHGR-INFMKAGLRYADRITTVSRNYAREIMTPE 229          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_SULSY (Glycogen synthase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 1
Query:   70 IYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            +YGP  G DY DN +RF   C A +E  +  NLN           D++ V NDW T+LIP      Y    +    + V  IHN+AYQG F       LNL        + ++ Y+K      +N++K GI+ S  + TVSP YA+E ++  + G  LD +
Sbjct:   97 LYGPPEG-DYPDNDIRFGSFCYAVMEFIKRENLNP----------DLIHV-NDWQTALIPVLNYHKYNNHHV----RTVITIHNLAYQGIFDKFAIERLNLGWDL-FHMEALEYYDK------VNFLKGGIVFSSAITTVSPTYAKE-ITFPEYGYGLDGV 233          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_PASMU (Glycogen synthase OS=Pasteurella multocida GN=glgA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 54/144 (37.50%), Postives = 72/144 (50.00%), Query Frame = 1
Query:   94 DYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            DY DN  RF +L   A E    L+          +  DVV  A+DWH  L   YL    +P      AK VF IHN+AYQG+FA+     + LPA        +DG    + G +I+++KAG+  SD V  VSP YA+E  + E
Sbjct:  102 DYADNYKRFALLGWVAAELATGLD--------SWWHADVVH-AHDWHAGLASAYLFNKGRP------AKSVFTIHNLAYQGQFAYHHLVEIGLPA----GMFHVDGLE--LHG-QISYLKAGLYYSDAVTAVSPTYAKEITTPE 223          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_AERHH (Glycogen synthase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 44/141 (31.21%), Postives = 66/141 (46.81%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVS 519
            Y DN  RF  L  AAL A   L           +  D+V   NDWHT L+P  LK  +     ++  + V  IHN A+QG F  + F  +   A ++    +  G+        +N +K G+L +D +  VSP+YA E ++
Sbjct:  111 YPDNGERFAFLAAAALHASEQL----------AFAPDIVH-CNDWHTGLLPLLLKTRHAHNPFFQHTRSVISIHNAAFQGVFERQQFWAVPEIADYEQRISYDYGH--------VNLLKCGVLYADKINAVSPNYASELLT 232          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA2_NITOC (Glycogen synthase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 1
Query:   88 GEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            G+D+ DN  RF   C+A      +  L ++  F   +  D++   NDW T LIP +L  +            +F IHN+AYQG F+ + F  L LP+ + S    ++ YN      +I+++K G++ +D + TVSP YA+E ++ E  G  LD +
Sbjct:  105 GQDWPDNAARFTTFCRA------VATLANSPEFD--WQPDLIH-CNDWQTGLIPPFLAPLRSRPA------TLFTIHNLAYQGVFSRQQFDALELPSAWWSP-AALEFYN------QISFIKGGLVFADWLTTVSPTYAKEILTPE-FGCGLDGV 236          
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GLGA_GEOSF4.770e-1232.14Glycogen synthase OS=Geobacter sp. (strain FRC-32)... [more]
GLGA_ANATD6.230e-1236.69Glycogen synthase OS=Anaerocellum thermophilum (st... [more]
GLGA_CALS88.137e-1236.17Glycogen synthase OS=Caldicellulosiruptor saccharo... [more]
GLGA_TREDE1.063e-1131.15Glycogen synthase OS=Treponema denticola GN=glgA P... [more]
GLGA_ERWCT1.063e-1135.57Glycogen synthase OS=Erwinia carotovora subsp. atr... [more]
GLGA_BORPD1.063e-1132.89Glycogen synthase OS=Bordetella petrii (strain ATC... [more]
GLGA_SULSY1.388e-1134.16Glycogen synthase OS=Sulfurihydrogenibium sp. (str... [more]
GLGA_PASMU1.388e-1137.50Glycogen synthase OS=Pasteurella multocida GN=glgA... [more]
GLGA_AERHH1.388e-1131.21Glycogen synthase OS=Aeromonas hydrophila subsp. h... [more]
GLGA2_NITOC1.388e-1132.26Glycogen synthase 2 OS=Nitrosococcus oceani (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
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