FC868550

Overview
NameFC868550
Unique NameFC868550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_RABIT (Cystic fibrosis transmembrane conductance regulator OS=Oryctolagus cuniculus GN=CFTR PE=2 SV=4)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 73/210 (34.76%), Postives = 121/210 (57.62%), Query Frame = 1
Query:    1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 630
            VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C R L+++   V +Y++ ++LLS E S F + + S+  A
Sbjct: 1241 VGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENTVRQYESIQKLLS-EKSLFRQAISSSDRA 1448          
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_HYLLE (Cystic fibrosis transmembrane conductance regulator OS=Hylobates leucogenys GN=CFTR PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 72/204 (35.29%), Postives = 120/204 (58.82%), Query Frame = 1
Query:    1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 612
            VG++GRTG+GKS++L+ L R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V +YD+ ++LL NE S F + +
Sbjct: 1240 VGLLGRTGSGKSTLLSALLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLL-NERSLFRQAI 1441          
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_CERAE (Cystic fibrosis transmembrane conductance regulator OS=Cercopithecus aethiops GN=CFTR PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 72/204 (35.29%), Postives = 119/204 (58.33%), Query Frame = 1
Query:    1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 612
            VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++WE  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V +YD+ ++LL NE S F + +
Sbjct: 1241 VGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWEVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLL-NERSLFRQAI 1442          
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_MICMU (Cystic fibrosis transmembrane conductance regulator OS=Microcebus murinus GN=CFTR PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.301e-31
Identity = 69/196 (35.20%), Postives = 114/196 (58.16%), Query Frame = 1
Query:    1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 588
            VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C R L+++   V +YD+ ++LLS +
Sbjct: 1241 VGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENNVRQYDSIQKLLSEK 1435          
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_DASNO (Cystic fibrosis transmembrane conductance regulator OS=Dasypus novemcinctus GN=CFTR PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.301e-31
Identity = 68/196 (34.69%), Postives = 115/196 (58.67%), Query Frame = 1
Query:    1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 588
            VG++GRTG+GKS++L+   R++   +G I IDG       L + RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C R L+++  +V +YD+ + LLS +
Sbjct: 1242 VGLLGRTGSGKSTLLSAFLRLLNT-KGEIQIDGVSWDSITLQEWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDSIQRLLSEK 1436          
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_SQUAC (Cystic fibrosis transmembrane conductance regulator OS=Squalus acanthias GN=CFTR PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31
Identity = 74/203 (36.45%), Postives = 118/203 (58.13%), Query Frame = 1
Query:    1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 609
            VG++GRTGAGKS++L+ L R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  E   LK  I +    L+  + + G   S G +Q            KIL+LDE TA +D  T  +I+KT++  F +CT+++  HR+  +++C + L+++   V ++D  ++LL+ E S F ++
Sbjct: 1250 VGLLGRTGAGKSTLLSALLRLLSTE-GEIQIDGISWNSVSLQKWRKAFGVIPQKVFVFSGTFRKNLDPYEQWSDEEIWKVTEEVGLKSMIEQFPDKLNFVLVDGGYILSNGHKQLMCLARSILSKAKILLLDEPTAHLDPVTFQIIRKTLKHTFSNCTVILSEHRVEALLECQQFLVIEGCSVKQFDALQKLLT-EASLFKQV 1450          
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_PONAB (Cystic fibrosis transmembrane conductance regulator OS=Pongo abelii GN=CFTR PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31
Identity = 71/204 (34.80%), Postives = 119/204 (58.33%), Query Frame = 1
Query:    1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 612
            VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V +YD+ ++LL NE S F + +
Sbjct: 1240 VGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLL-NERSLFQQAI 1441          
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_MACNE (Cystic fibrosis transmembrane conductance regulator OS=Macaca nemestrina GN=CFTR PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31
Identity = 71/204 (34.80%), Postives = 119/204 (58.33%), Query Frame = 1
Query:    1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 612
            VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V +YD+ ++LL NE S F + +
Sbjct: 1241 VGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLL-NERSLFQQAI 1442          
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: Y1303_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1303c OS=Mycobacterium bovis GN=Mb1303c PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31
Identity = 78/198 (39.39%), Postives = 114/198 (57.58%), Query Frame = 1
Query:    1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 591
            V IVG TGAGK++++N L R  E+  GRILIDG DIA      LR  +G++ Q   L+ GT+  N+      +  D + EA   AH+   +     G   +VS  G + SVG++Q            ++L+LDEAT++VD RT+ LIQ+ +RE  +  T  IIAHRL+TI D D IL++ +G+++E     ELL+  G
Sbjct:  426 VAIVGPTGAGKTTLVNLLMRFYEIGSGRILIDGVDIASVSRQSLRSRIGMVLQDTWLYDGTIAENIAYGRPEATTDEIVEAARAAHVDRFVNTLPAGYQTRVSGDGGSISVGEKQLITIARAFLARPQLLILDEATSSVDTRTELLIQRAMRELRRDRTSFIIAHRLSTIRDADHILVVQTGQIVERGNHAELLARRG 623          
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: Y1272_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1272c/MT1310 OS=Mycobacterium tuberculosis GN=Rv1272c PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31
Identity = 78/198 (39.39%), Postives = 114/198 (57.58%), Query Frame = 1
Query:    1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 591
            V IVG TGAGK++++N L R  E+  GRILIDG DIA      LR  +G++ Q   L+ GT+  N+      +  D + EA   AH+   +     G   +VS  G + SVG++Q            ++L+LDEAT++VD RT+ LIQ+ +RE  +  T  IIAHRL+TI D D IL++ +G+++E     ELL+  G
Sbjct:  426 VAIVGPTGAGKTTLVNLLMRFYEIGSGRILIDGVDIASVSRQSLRSRIGMVLQDTWLYDGTIAENIAYGRPEATTDEIVEAARAAHVDRFVNTLPAGYQTRVSGDGGSISVGEKQLITIARAFLARPQLLILDEATSSVDTRTELLIQRAMRELRRDRTSFIIAHRLSTIRDADHILVVQTGQIVERGNHAELLARRG 623          
The following BLAST results are available for this feature:
BLAST of FC868550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CFTR_RABIT7.627e-3234.76Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_HYLLE7.627e-3235.29Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_CERAE7.627e-3235.29Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MICMU1.301e-3135.20Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_DASNO1.301e-3134.69Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_SQUAC1.699e-3136.45Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_PONAB1.699e-3134.80Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACNE1.699e-3134.80Cystic fibrosis transmembrane conductance regulato... [more]
Y1303_MYCBO2.219e-3139.39Uncharacterized ABC transporter ATP-binding protei... [more]
Y1272_MYCTU2.219e-3139.39Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionC31001G09EF AbioticL1 Citrus clementina cDNA clone C31001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868550 ID=FC868550; Name=FC868550; organism=Citrus clementina; type=EST; length=652bp
GTAGGAATAGTTGGAAGGACTGGTGCTGGGAAATCTAGCATGCTTAATAC
ATTATTTAGAATTGTAGAGCTAGAAAGAGGAAGAATCTTGATTGATGGTT
TTGACATTGCTAAGTTTGGATTGATGGACCTGCGTAAAATACTCGGTATT
ATACCACAATCACCAGTTCTTTTCTCAGGAACTGTAAGATTTAATCTTGA
TCCTTTCAGTGAACACAGTGATGCCGATCTTTGGGAGGCCTTAGAGAGGG
CACATTTGAAGGATGCCATACGCAGGAATTCTTTGGGTCTGGATGCACAG
GTCTCGGAGGCAGGGGAGAATTTTAGTGTTGGACAAAGGCAACTATTAAG
TCTTTCTCGGGCGTTATTGCGGAGATCTAAGATACTTGTTCTTGATGAAG
CAACTGCAGCTGTTGATGTTAGAACAGATGCACTTATTCAGAAAACCATA
AGAGAAGAGTTTAAATCATGTACTATGCTTATTATAGCTCACCGTCTTAA
TACCATCATTGACTGTGATCGGATTCTTCTGCTTGATTCTGGCCGGGTTC
TTGAATATGATACACCAGAGGAGCTGTTGTCCAATGAAGGAAGTTCTTTC
TCTAAGATGGTTCAGAGCACTGGTGCTGCAAATGCTCAGTACCTACGTAG
CT
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