FC868550
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_RABIT (Cystic fibrosis transmembrane conductance regulator OS=Oryctolagus cuniculus GN=CFTR PE=2 SV=4) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 73/210 (34.76%), Postives = 121/210 (57.62%), Query Frame = 1 Query: 1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 630 VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C R L+++ V +Y++ ++LLS E S F + + S+ A Sbjct: 1241 VGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENTVRQYESIQKLLS-EKSLFRQAISSSDRA 1448
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_HYLLE (Cystic fibrosis transmembrane conductance regulator OS=Hylobates leucogenys GN=CFTR PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 72/204 (35.29%), Postives = 120/204 (58.82%), Query Frame = 1 Query: 1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 612 VG++GRTG+GKS++L+ L R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V +YD+ ++LL NE S F + + Sbjct: 1240 VGLLGRTGSGKSTLLSALLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLL-NERSLFRQAI 1441
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_CERAE (Cystic fibrosis transmembrane conductance regulator OS=Cercopithecus aethiops GN=CFTR PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 72/204 (35.29%), Postives = 119/204 (58.33%), Query Frame = 1 Query: 1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 612 VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++WE + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V +YD+ ++LL NE S F + + Sbjct: 1241 VGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWEVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLL-NERSLFRQAI 1442
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_MICMU (Cystic fibrosis transmembrane conductance regulator OS=Microcebus murinus GN=CFTR PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.301e-31 Identity = 69/196 (35.20%), Postives = 114/196 (58.16%), Query Frame = 1 Query: 1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 588 VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C R L+++ V +YD+ ++LLS + Sbjct: 1241 VGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENNVRQYDSIQKLLSEK 1435
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_DASNO (Cystic fibrosis transmembrane conductance regulator OS=Dasypus novemcinctus GN=CFTR PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.301e-31 Identity = 68/196 (34.69%), Postives = 115/196 (58.67%), Query Frame = 1 Query: 1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 588 VG++GRTG+GKS++L+ R++ +G I IDG L + RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C R L+++ +V +YD+ + LLS + Sbjct: 1242 VGLLGRTGSGKSTLLSAFLRLLNT-KGEIQIDGVSWDSITLQEWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDSIQRLLSEK 1436
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_SQUAC (Cystic fibrosis transmembrane conductance regulator OS=Squalus acanthias GN=CFTR PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31 Identity = 74/203 (36.45%), Postives = 118/203 (58.13%), Query Frame = 1 Query: 1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 609 VG++GRTGAGKS++L+ L R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ E LK I + L+ + + G S G +Q KIL+LDE TA +D T +I+KT++ F +CT+++ HR+ +++C + L+++ V ++D ++LL+ E S F ++ Sbjct: 1250 VGLLGRTGAGKSTLLSALLRLLSTE-GEIQIDGISWNSVSLQKWRKAFGVIPQKVFVFSGTFRKNLDPYEQWSDEEIWKVTEEVGLKSMIEQFPDKLNFVLVDGGYILSNGHKQLMCLARSILSKAKILLLDEPTAHLDPVTFQIIRKTLKHTFSNCTVILSEHRVEALLECQQFLVIEGCSVKQFDALQKLLT-EASLFKQV 1450
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_PONAB (Cystic fibrosis transmembrane conductance regulator OS=Pongo abelii GN=CFTR PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31 Identity = 71/204 (34.80%), Postives = 119/204 (58.33%), Query Frame = 1 Query: 1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 612 VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V +YD+ ++LL NE S F + + Sbjct: 1240 VGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLL-NERSLFQQAI 1441
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: CFTR_MACNE (Cystic fibrosis transmembrane conductance regulator OS=Macaca nemestrina GN=CFTR PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31 Identity = 71/204 (34.80%), Postives = 119/204 (58.33%), Query Frame = 1 Query: 1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 612 VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V +YD+ ++LL NE S F + + Sbjct: 1241 VGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLL-NERSLFQQAI 1442
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: Y1303_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1303c OS=Mycobacterium bovis GN=Mb1303c PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31 Identity = 78/198 (39.39%), Postives = 114/198 (57.58%), Query Frame = 1 Query: 1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 591 V IVG TGAGK++++N L R E+ GRILIDG DIA LR +G++ Q L+ GT+ N+ + D + EA AH+ + G +VS G + SVG++Q ++L+LDEAT++VD RT+ LIQ+ +RE + T IIAHRL+TI D D IL++ +G+++E ELL+ G Sbjct: 426 VAIVGPTGAGKTTLVNLLMRFYEIGSGRILIDGVDIASVSRQSLRSRIGMVLQDTWLYDGTIAENIAYGRPEATTDEIVEAARAAHVDRFVNTLPAGYQTRVSGDGGSISVGEKQLITIARAFLARPQLLILDEATSSVDTRTELLIQRAMRELRRDRTSFIIAHRLSTIRDADHILVVQTGQIVERGNHAELLARRG 623
BLAST of FC868550 vs. ExPASy Swiss-Prot
Match: Y1272_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1272c/MT1310 OS=Mycobacterium tuberculosis GN=Rv1272c PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31 Identity = 78/198 (39.39%), Postives = 114/198 (57.58%), Query Frame = 1 Query: 1 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 591 V IVG TGAGK++++N L R E+ GRILIDG DIA LR +G++ Q L+ GT+ N+ + D + EA AH+ + G +VS G + SVG++Q ++L+LDEAT++VD RT+ LIQ+ +RE + T IIAHRL+TI D D IL++ +G+++E ELL+ G Sbjct: 426 VAIVGPTGAGKTTLVNLLMRFYEIGSGRILIDGVDIASVSRQSLRSRIGMVLQDTWLYDGTIAENIAYGRPEATTDEIVEAARAAHVDRFVNTLPAGYQTRVSGDGGSISVGEKQLITIARAFLARPQLLILDEATSSVDTRTELLIQRAMRELRRDRTSFIIAHRLSTIRDADHILVVQTGQIVERGNHAELLARRG 623 The following BLAST results are available for this feature:
BLAST of FC868550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868550 ID=FC868550; Name=FC868550; organism=Citrus clementina; type=EST; length=652bpback to top |