FC868552

Overview
NameFC868552
Unique NameFC868552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:26..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: TDH_YERPP (L-threonine 3-dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=tdh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 1
Query:  133 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            P LG  D++++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  G  A  +V PA   FK+PDN+S E  A+ +P    VH     ++  E +VL+ G+GPIG++     +  GA
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRP--GSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGA 188          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: TDH_YERPN (L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tdh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 1
Query:  133 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            P LG  D++++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  G  A  +V PA   FK+PDN+S E  A+ +P    VH     ++  E +VL+ G+GPIG++     +  GA
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRP--GSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGA 188          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: TDH_YERPG (L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=tdh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 1
Query:  133 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            P LG  D++++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  G  A  +V PA   FK+PDN+S E  A+ +P    VH     ++  E +VL+ G+GPIG++     +  GA
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRP--GSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGA 188          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: TDH_YERPE (L-threonine 3-dehydrogenase OS=Yersinia pestis GN=tdh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 1
Query:  133 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            P LG  D++++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  G  A  +V PA   FK+PDN+S E  A+ +P    VH     ++  E +VL+ G+GPIG++     +  GA
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRP--GSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGA 188          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: TDH_YERPB (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=tdh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 1
Query:  133 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            P LG  D++++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  G  A  +V PA   FK+PDN+S E  A+ +P    VH     ++  E +VL+ G+GPIG++     +  GA
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRP--GSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGA 188          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: TDH_YERPA (L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tdh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 1
Query:  133 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            P LG  D++++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  G  A  +V PA   FK+PDN+S E  A+ +P    VH     ++  E +VL+ G+GPIG++     +  GA
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRP--GSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGA 188          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: TDH_YERP3 (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tdh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 1
Query:  133 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            P LG  D++++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  G  A  +V PA   FK+PDN+S E  A+ +P    VH     ++  E +VL+ G+GPIG++     +  GA
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRP--GSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGA 188          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: TDH_YERE8 (L-threonine 3-dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tdh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 1
Query:  133 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            P LG  D++++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  G  A  +V PA   FK+PDN+S E  A+ +P    VH     ++  E +VL+ G+GPIG++     +  GA
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRP--GSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGA 188          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: TDH_THET2 (L-threonine 3-dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tdh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 66/171 (38.60%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  130 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            +P  GP ++LVR++A  +CG+D+H  K    A   ++ P+V GHE +GV+E VG  VK    GD V+LE  + C  C  C+ G Y++C  +K LG     G  A  VV PA+  +  P ++  E  A+ EP    VH     +     +VLI G+GPIGL+  + ARA GA
Sbjct:   20 VPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVKRPQVGDHVSLESHVVCHACPACRTGNYHVCLNTKILGVDR-DGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLMAAMVARASGA 189          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: TDH_ANASK (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain K) GN=tdh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 62/172 (36.05%), Postives = 100/172 (58.14%), Query Frame = 1
Query:  130 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            +P +G +DV++++    +CG+DVH       +   V  PMV+GHE  G +EKVG+EV+   PG+RV+ E  ++C  C  C+ GR +LC  + G+G + P  G  A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ G+GPIG++    AR  GA
Sbjct:   21 VPEVGVHDVMIKVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNRP--GSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGAGPIGVMAAAIARHVGA 189          
The following BLAST results are available for this feature:
BLAST of FC868552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 290
Match NameE-valueIdentityDescription
TDH_YERPP3.938e-2536.84L-threonine 3-dehydrogenase OS=Yersinia pestis (st... [more]
TDH_YERPN3.938e-2536.84L-threonine 3-dehydrogenase OS=Yersinia pestis bv.... [more]
TDH_YERPG3.938e-2536.84L-threonine 3-dehydrogenase OS=Yersinia pestis bv.... [more]
TDH_YERPE3.938e-2536.84L-threonine 3-dehydrogenase OS=Yersinia pestis GN=... [more]
TDH_YERPB3.938e-2536.84L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERPA3.938e-2536.84L-threonine 3-dehydrogenase OS=Yersinia pestis bv.... [more]
TDH_YERP33.938e-2536.84L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERE83.938e-2536.84L-threonine 3-dehydrogenase OS=Yersinia enterocoli... [more]
TDH_THET23.938e-2538.60L-threonine 3-dehydrogenase OS=Thermus thermophilu... [more]
TDH_ANASK3.938e-2536.05L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]

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Properties
Property NameValue
Genbank descriptionC31001G11EF AbioticL1 Citrus clementina cDNA clone C31001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868552 ID=FC868552; Name=FC868552; organism=Citrus clementina; type=EST; length=643bp
TGTTTTTGAAGAGTTCAAGCAAATATGGGCAAGGGAGGGATGTCACAAGG
AGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTG
TCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTGGGACCTTAT
GATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAGTGATGTGCA
TTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGCCTATGG
TGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTG
AAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGATCAGCTG
CTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGT
CGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCTAATCAGGTG
GTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGTCAGCCTGGA
GGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCCTGCCGCC
GTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGATCAGGGCCC
ATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGCTC
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