FC868553

Overview
NameFC868553
Unique NameFC868553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15109 contig Ccv1_Contig15109:5..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868553 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.828e-36
Identity = 81/188 (43.09%), Postives = 117/188 (62.23%), Query Frame = 2 
Query:   80 SKSKILFIGGTGYIGKFIVEASAKAGHPTFVLVRESTLSDPSKSQLLDHFKKLGVNLVIGDVLNHESLVKAIKQ--VDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVY 637
            +K++ L +GGTG+IG+FI +AS   G+PTF+LVR   +S PSK+ ++  F+  G  ++ G + + E + K +K+  +DVVIS VG   L DQ+ ++ AIK    IKRF PSEFG+DVDR   VEP  + +  K  +RRAVE  GIP+T +  N  A++   +   P    PP D+  I GDGN KA +
Sbjct:   11 TKNRTLVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRTDPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYF 197
The following BLAST results are available for this feature:
BLAST of FC868553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN6.828e-3643.09Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionC31001G12EF AbioticL1 Citrus clementina cDNA clone C31001G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868553 ID=FC868553; Name=FC868553; organism=Citrus clementina; type=EST; length=665bp
ATTTGATCATTTCAAATCCAACAGAAAAAAAAAAGGAAAGAATCCCCGAA
ATTGAACTGAATAATTCTCGGTAATGGCGTCGAAAAGCAAGATTCTATTC
ATCGGCGGTACAGGGTACATCGGCAAATTCATCGTCGAAGCGAGCGCGAA
AGCCGGCCACCCGACGTTCGTGCTCGTGAGAGAATCCACACTCTCCGATC
CTTCCAAATCTCAGCTCCTCGATCACTTCAAAAAACTCGGCGTCAATCTC
GTCATCGGAGATGTGTTGAATCACGAGAGCTTGGTGAAGGCGATAAAACA
AGTGGACGTGGTGATATCAACGGTCGGTCACACTTTATTAGGTGATCAGG
TCAAGATTATTGCGGCCATTAAAGAAGCTGGTAACATTAAGAGATTCTTC
CCTTCAGAATTTGGGAATGATGTTGATCGAGTCCATGCCGTTGAGCCAGC
AAAATCAGCATTTGCCACAAAGGCAAAAATCCGCCGAGCCGTTGAGGCTG
AAGGGATTCCGTATACTTATGTAGCGTCGAATTTCTTTGCTGCTTACTTC
CTTCCCAATTTGTCGCAGCCCGGGGCCACTGCCCCACCTAGGGATAAAGT
TGTCATCTTAGGCGATGGCAATCCAAAAGCTGTTTATAACAGGCAGATGA
TATTGGTACCTATAC
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