FC868555

Overview
NameFC868555
Unique NameFC868555
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9346 contig Ccv1_Contig9346:41..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868555 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  303 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG----LYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK 647
            + MAVG++N+DV  A + GI V NTPGV                 RR+VEAD F+R G    L  GW P + +G  L+G+T+G++G GRIGS  A  + + F M +IY+   +   +EK
Sbjct:   73 AQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAE-IGKAFGMRIIYHSRSRKREIEK 190          
BLAST of FC868555 vs. ExPASy Swiss-Prot
Match: Y606_STAS1 (Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 57/180 (31.67%), Postives = 86/180 (47.78%), Query Frame = 3
Query:  120 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 659
            +NLL +Q   V++  +   I+  E +   + D  D +I  L+    + +  A +    K  +N   G+NNVD++ A +  I V NTP                   RRI E D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR   + F MN++Y   +Q    E+ + A
Sbjct:   15 LNLLKDQGFEVDMY-EGTGIIDKETLKQGVKD-ADALISLLSTSVDKEVIDAANNL--KIITNYGAGFNNVDIDYARQQNIDVTNTPKASTNSTAELTFALVLAVARRIPEGDKLCRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RAKAFDMNILYTGPHQKVDKEREIGA 189          
BLAST of FC868555 vs. ExPASy Swiss-Prot
Match: Y752_STAHJ (Putative 2-hydroxyacid dehydrogenase SH0752 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0752 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.307e-14
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = 3
Query:  294 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 659
            K  +N   G+NNVDV  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA A+   + F M+++Y   +Q    E+ + A
Sbjct:   68 KIIANYGAGFNNVDVKYAREKDIDVTNTPKASTASTAELTFGLVLAVARRIVEGDKLSRTQGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAK-RAKAFDMDILYTGPHQKKEKEREIGA 188          
BLAST of FC868555 vs. ExPASy Swiss-Prot
Match: Y2577_STAA8 (Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 3
Query:  294 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 614
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868555 vs. ExPASy Swiss-Prot
Match: Y2389_STAAR (Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 3
Query:  294 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 614
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868555 vs. ExPASy Swiss-Prot
Match: Y2305_STAAM (Putative 2-hydroxyacid dehydrogenase SAV2305 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2305 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 3
Query:  294 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 614
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868555 vs. ExPASy Swiss-Prot
Match: Y2296_STAAC (Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus aureus (strain COL) GN=SACOL2296 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 3
Query:  294 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 614
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868555 vs. ExPASy Swiss-Prot
Match: Y2254_STAA3 (Putative 2-hydroxyacid dehydrogenase SAUSA300_2254 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2254 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 3
Query:  294 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 614
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868555 vs. ExPASy Swiss-Prot
Match: Y2224_STAAW (Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus aureus (strain MW2) GN=MW2224 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 3
Query:  294 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 614
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868555 vs. ExPASy Swiss-Prot
Match: Y2196_STAAS (Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 3
Query:  294 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 614
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
The following BLAST results are available for this feature:
BLAST of FC868555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
GYAR_AERPE1.025e-1539.50Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]
Y606_STAS11.133e-1431.67Putative 2-hydroxyacid dehydrogenase SSP0606 OS=St... [more]
Y752_STAHJ4.307e-1436.89Putative 2-hydroxyacid dehydrogenase SH0752 OS=Sta... [more]
Y2577_STAA81.636e-1338.32Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577... [more]
Y2389_STAAR1.636e-1338.32Putative 2-hydroxyacid dehydrogenase SAR2389 OS=St... [more]
Y2305_STAAM1.636e-1338.32Putative 2-hydroxyacid dehydrogenase SAV2305 OS=St... [more]
Y2296_STAAC1.636e-1338.32Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=... [more]
Y2254_STAA31.636e-1338.32Putative 2-hydroxyacid dehydrogenase SAUSA300_2254... [more]
Y2224_STAAW1.636e-1338.32Putative 2-hydroxyacid dehydrogenase MW2224 OS=Sta... [more]
Y2196_STAAS1.636e-1338.32Putative 2-hydroxyacid dehydrogenase SAS2196 OS=St... [more]

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Properties
Property NameValue
Genbank descriptionC31001H02EF AbioticL1 Citrus clementina cDNA clone C31001H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868555 ID=FC868555; Name=FC868555; organism=Citrus clementina; type=EST; length=666bp
ACTTGGAACTTGAAACTGCCAACTTAGCTTCAATGGCGAAGCCAGTTTCG
ATTGAAGTGTGGAACCCAAATGGAAAATACAGAGTTGTTAGTACCAAGCC
TATGCCTGGAACCCGCTGGATCAATCTCTTAATCGAACAAGATTGCCGTG
TTGAAATATGCACCCAGAAGAAAACTATACTCTCTGTTGAAGATATCATT
GCTTTGATTGGTGACAAGTGCGATGGAGTCATTGGACAGTTGACAGAGGA
CTGGGGAGAGACTTTGTTTGCTGCACTGAGTAGAGCAGGAGGAAAGGCTT
TTAGTAACATGGCTGTTGGTTACAACAATGTTGACGTTAATGCTGCTAAC
AAATATGGTATTGCTGTTGGAAACACTCCTGGAGTACTTACAGAAACAAC
AGCAGAGTTAGCAGCTTCGCTCTCTCTAGCGGCTGCAAGAAGAATTGTTG
AAGCAGATGAGTTTATGAGAGCTGGCTTATACGATGGATGGCTTCCAAAT
CTGTTCGTTGGGAACTTGCTCAAGGGACAGACTATTGGTGTGATTGGAGC
TGGTCGTATAGGATCTGCCTATGCTAGAATGATGGTTGAAGGGTTCAAAA
TGAACCTCATTTACTATGATCTTTACCAAGCTACACGCTTGGAAAAGTTT
GTCACAGCTTATGGTC
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