FC868559
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13 Identity = 60/207 (28.99%), Postives = 95/207 (45.89%), Query Frame = 2 Query: 68 PRHGSLGFLPRKRAARHRGKVKAFPK--DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSE-EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679 PR GSLG+ PR RA + K++ + + D P ++ F+G+KAGM+HIV ++P S E VTI+E Y +P G + + W L E KN Y+TDE I A+L K K + +RV+ T ++ G+ +K LME ++ GG +A++ ++A K + + F Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQP----KIQGFVGFKAGMSHIVMVDDRPHSATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKN--------------GYKTDEQLAKI-AELVK-KGVVADLRVMTVTLTSEVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDVF 193
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12 Identity = 51/190 (26.84%), Postives = 86/190 (45.26%), Query Frame = 2 Query: 68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637 P+ GSL F PRKRA H + +A+P + + +L +F GYK GMTH++ + S E VT+IET Y + G +++ WA L E++RR EG ++I +E+ + S +R + +T + + G+ +K +ME ++ + K +YA Sbjct: 7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQGMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRRI-------------PIPAAGNQAEGLENIGKLIEEGR--VSDIRAVTYTLPKSLTGVPKKVPDIMESGISAKDLGAKFEYA 179
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12 Identity = 54/190 (28.42%), Postives = 84/190 (44.21%), Query Frame = 2 Query: 68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637 P+ GSL F PRKRA H + +A+P + + RL F GYK GMTH++ + S E VTIIET Y + G +++ VWA L E++RR E +I +E+ K S +R + +T + + G+ +K +ME ++ + K +YA Sbjct: 7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPRLQGFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTIIETPAIRVAAIRAYAEDTAGEKAIAEVWATDLDPELKRRI-------------PVPKGDNMAETLGNIGKMIEEGK--VSDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYA 179
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12 Identity = 52/204 (25.49%), Postives = 94/204 (46.08%), Query Frame = 2 Query: 68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679 PR GS+GF PRKRA+R ++K +PK + KP AF YK GMTH + ++ + + VT++E Y K L+ +++++ L + V R+ K Y +E K+ ++ + A V+++ TQ K+K +K + +I + G + +K++YA K++ ++ F Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKP---LAFAAYKVGMTHTILNI-------NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK-------------LKNYNFEEKKEQFLSKADN----ADEVKIIVSTQPWKIK--LKKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVF 183
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12 Identity = 53/199 (26.63%), Postives = 84/199 (42.21%), Query Frame = 2 Query: 56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKY-----ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637 K PR GSL + PRKR+ H + +++P+ D +L F GYK GMTH++ + S E VTIIET Y K G ++ W L +++ RR + A LEK++ A+ +R++ +T + G+ +K +ME V+G + K +YA Sbjct: 3 KGHRPRRGSLAYSPRKRSQSHIPRFRSWPESDAEP--KLQGFAGYKVGMTHVIMIDDVKHSLTEGTEISVPVTIIETPAIRVAAIRAYGKDTYGEIAIAEAWTDVLDKDLSRRL--------------------KTAKNPDVNASLEKLETLVESGRANDIRLITYTLPSTLTGVPKKVPDVMETGVSGSDVKAKFEYA 179
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12 Identity = 51/190 (26.84%), Postives = 86/190 (45.26%), Query Frame = 2 Query: 68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637 P+ GSL F PRKRA H + +A+P + + +L +F GYK GMTH++ + S E VT+IET Y + G +++ VWA L E++RR E ++I +E+ + S VR + +T + + G+ +K +ME ++ + K +Y+ Sbjct: 7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRRI-------------PIPAAGNQAEALENIGKLIEEGR--VSDVRAVIYTLPKSLTGVPKKVPDIMESGISARDLGTKFEYS 179
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 57/199 (28.64%), Postives = 90/199 (45.23%), Query Frame = 2 Query: 56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA------QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDY 634 K PR GSL F PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG + KE VTIIET Y + GL + V ++S++ + R + + Y D+ ++ + LE + K +V V A + +KK +ME + G ++ EK +Y Sbjct: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKE---TEVRMLGFAGYKAGMTHILMIDDEPG-LTNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKF-TFYQLLKRRIATLPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNY 195 The following BLAST results are available for this feature:
BLAST of FC868559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868559 ID=FC868559; Name=FC868559; organism=Citrus clementina; type=EST; length=679bpback to top |