FC868559

Overview
NameFC868559
Unique NameFC868559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
AbioticL1cdna_library
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:22..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 60/207 (28.99%), Postives = 95/207 (45.89%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPK--DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSE-EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            PR GSLG+ PR RA   + K++ + +  D P    ++  F+G+KAGM+HIV   ++P S     E    VTI+E           Y  +P G + +   W   L   E      KN               Y+TDE    I A+L K K   + +RV+  T   ++ G+ +K   LME ++ GG +A++ ++A     K + +   F
Sbjct:    7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQP----KIQGFVGFKAGMSHIVMVDDRPHSATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKN--------------GYKTDEQLAKI-AELVK-KGVVADLRVMTVTLTSEVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDVF 193          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 51/190 (26.84%), Postives = 86/190 (45.26%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IET          Y +   G +++   WA  L  E++RR                       EG ++I   +E+ +   S +R + +T  + + G+ +K   +ME  ++   +  K +YA
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQGMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRRI-------------PIPAAGNQAEGLENIGKLIEEGR--VSDIRAVTYTLPKSLTGVPKKVPDIMESGISAKDLGAKFEYA 179          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 54/190 (28.42%), Postives = 84/190 (44.21%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637
            P+ GSL F PRKRA  H  + +A+P  + +   RL  F GYK GMTH++   +   S     E    VTIIET          Y +   G +++  VWA  L  E++RR                       E   +I   +E+ K   S +R + +T  + + G+ +K   +ME  ++   +  K +YA
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPRLQGFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTIIETPAIRVAAIRAYAEDTAGEKAIAEVWATDLDPELKRRI-------------PVPKGDNMAETLGNIGKMIEEGK--VSDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYA 179          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 52/204 (25.49%), Postives = 94/204 (46.08%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            PR GS+GF PRKRA+R   ++K +PK +  KP    AF  YK GMTH + ++       + +     VT++E           Y K    L+ +++++   L + V R+  K                Y  +E K+   ++ +     A  V+++  TQ  K+K   +K   + +I + G  + +K++YA     K++ ++  F
Sbjct:    9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKP---LAFAAYKVGMTHTILNI-------NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK-------------LKNYNFEEKKEQFLSKADN----ADEVKIIVSTQPWKIK--LKKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVF 183          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 53/199 (26.63%), Postives = 84/199 (42.21%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKY-----ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637
            K   PR GSL + PRKR+  H  + +++P+ D     +L  F GYK GMTH++   +   S     E    VTIIET          Y K   G  ++   W   L +++ RR                            + A LEK++       A+ +R++ +T    + G+ +K   +ME  V+G  +  K +YA
Sbjct:    3 KGHRPRRGSLAYSPRKRSQSHIPRFRSWPESDAEP--KLQGFAGYKVGMTHVIMIDDVKHSLTEGTEISVPVTIIETPAIRVAAIRAYGKDTYGEIAIAEAWTDVLDKDLSRRL--------------------KTAKNPDVNASLEKLETLVESGRANDIRLITYTLPSTLTGVPKKVPDVMETGVSGSDVKAKFEYA 179          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 51/190 (26.84%), Postives = 86/190 (45.26%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IET          Y +   G +++  VWA  L  E++RR                       E  ++I   +E+ +   S VR + +T  + + G+ +K   +ME  ++   +  K +Y+
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRRI-------------PIPAAGNQAEALENIGKLIEEGR--VSDVRAVIYTLPKSLTGVPKKVPDIMESGISARDLGTKFEYS 179          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 57/199 (28.64%), Postives = 90/199 (45.23%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA------QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDY 634
            K   PR GSL F PRKRA     +++++PK+      R+  F GYKAGMTHI+   ++PG   + KE    VTIIET          Y +   GL +   V         ++S++ + R +  +              Y  D+ ++ +   LE + K   +V V A    +      +KK  +ME  + G ++ EK +Y
Sbjct:    3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKE---TEVRMLGFAGYKAGMTHILMIDDEPG-LTNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKF-TFYQLLKRRIATLPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNY 195          
The following BLAST results are available for this feature:
BLAST of FC868559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_UNCMA4.982e-1328.9950S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_METMA1.110e-1226.8450S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METBF1.110e-1228.4250S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_NANEQ1.893e-1225.4950S ribosomal protein L3P OS=Nanoarchaeum equitans... [more]
RL3_METBU1.893e-1226.6350S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_METAC3.229e-1226.8450S ribosomal protein L3P OS=Methanosarcina acetiv... [more]
RL3_PYRAB3.570e-1128.6450S ribosomal protein L3P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31001H07EF AbioticL1 Citrus clementina cDNA clone C31001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868559 ID=FC868559; Name=FC868559; organism=Citrus clementina; type=EST; length=679bp
GAGAGCACACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGAGAATGTCTC
ACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTTCTTCCAAGG
AAGCGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCCCAAGGATGA
CCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACAAGGCTGGGA
TGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAGCTTCACAAG
AAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCCAATGATGGT
GGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTCGCTCTTTGA
ACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGAAGGTTCTAC
AAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATACTCAAAGCA
GTATGAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGA
TCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGG
AAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGT
CAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTT
GAAAGCAAATTCCTGTTGATGCTGNTTTC
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