FC868560

Overview
NameFC868560
Unique NameFC868560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:17..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: DHSO_BOMMO (Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45
Identity = 88/202 (43.56%), Postives = 128/202 (63.37%), Query Frame = 1
Query:   85 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRL 690
            N AA L G N ++I+ + +P +   +VL+++  VG+CGSDV    T      V+ +P+VIGHE AG + KVG +V +L  GDRVA+EP   C  C+ CK G+YNLC E +   S    G L     H AD C KLPDN+++EEGA  +PL++ +HAC RA I   + ++I+G+GPIG++  + A+A GA +I++ DV   RL
Sbjct:    4 NYAAVLHGANDVRIEKIPVPEINDDEVLIKIDCVGICGSDVKLYSTGTCGADVIDKPIVIGHEGAGTVVKVGDKVSSLRVGDRVAIEPTQPCRSCELCKRGKYNLCVEPRYCSSMGAPGNLCRYYKHVADFCHKLPDNLTMEEGAAVQPLAIVIHACNRAKITLGSKIVILGAGPIGILCAMSAKAMGASKIILTDVVQSRL 205          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: XYLD_RHIME (Putative D-xylulose reductase OS=Rhizobium meliloti GN=R02526 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 88/183 (48.09%), Postives = 119/183 (65.03%), Query Frame = 1
Query:  148 LGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L P DVL+ ++ VGVCGSDVH+    ++  FVV EPM++GHE AGV+ +VGS+V+ L  GDRV +EPGI        K G YN+ P  +   +PPVHGCL  +VVHPA   ++LPD+VS  EGAM EP ++GV A  RA I P     +MG+GPIG++T L A A G  ++ + D+   +L V
Sbjct:   24 LSPTDVLIGIRTVGVCGSDVHYYTHGKIGPFVVNEPMILGHEAAGVVLEVGSQVRHLKKGDRVCMEPGIPDLSSRSSKLGIYNVDPSVRFWATPPVHGCLTPEVVHPAAFTYRLPDHVSFAEGAMVEPFAIGVQAALRAGIRPGDVGAVMGAGPIGMMTALAALAGGCSKVYVADLAQPKLDV 206          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: DHSO1_YEAST (Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisiae GN=SOR1 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.153e-42
Identity = 87/203 (42.86%), Postives = 126/203 (62.07%), Query Frame = 1
Query:   85 NMAAWLMGVNTLKIQPLELPSL-GPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRL 690
            N A  L  V  + I+   +P++  P+ V + +KA G+CGSD+H+ ++  +  +++K PMV+GHE +G + +VG  V  +  GDRVA+EPG+     D  K GRYNLCP      +PP+ G L    + P D   KLP+ VS EEGA  EPLSVGVH+ + A +   T V++ G+GP+GL+T   ARAFGA  ++ VDV D +L
Sbjct:    6 NPAVVLEKVGDIAIEQRPIPTIKDPHYVKLAIKATGICGSDIHYYRSGGIGKYILKAPMVLGHESSGQVVEVGDAVTRVKVGDRVAIEPGVPSRYSDETKEGRYNLCPHMAFAATPPIDGTLVKYYLSPEDFLVKLPEGVSYEEGACVEPLSVGVHSNKLAGVRFGTKVVVFGAGPVGLLTGAVARAFGATDVIFVDVFDNKL 208          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: DHSO2_YEAST (Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisiae GN=SOR2 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.565e-41
Identity = 86/203 (42.36%), Postives = 125/203 (61.58%), Query Frame = 1
Query:   85 NMAAWLMGVNTLKIQPLELPSL-GPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRL 690
            N A  L  V  + I+   +P++  P+ V + +KA G+CGSD+H+ ++  +  +++K PMV+GHE +G + +VG  V  +  GDRVA+EPG+     D  K G YNLCP      +PP+ G L    + P D   KLP+ VS EEGA  EPLSVGVH+ + A +   T V++ G+GP+GL+T   ARAFGA  ++ VDV D +L
Sbjct:    6 NPAVVLEKVGDIAIEQRPIPTIKDPHYVKLAIKATGICGSDIHYYRSGGIGKYILKAPMVLGHESSGQVVEVGDAVTRVKVGDRVAIEPGVPSRYSDETKEGSYNLCPHMAFAATPPIDGTLVKYYLSPEDFLVKLPEGVSYEEGACVEPLSVGVHSNKLAGVRFGTKVVVFGAGPVGLLTGAVARAFGATDVIFVDVFDNKL 208          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: XYLD_MORMO (D-xylulose reductase OS=Morganella morganii PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.554e-41
Identity = 86/183 (46.99%), Postives = 115/183 (62.84%), Query Frame = 1
Query:  148 LGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            LG  DV +++  VG+CGSDVH+ +  R+  FVV EPMV+GHE +GVI   G  VK L  GDRV +EPGI   Q    + G YNL P  +   +PP+ GCL   V+HPA   FKLPDNVS  +GAM EPL++G+ +  +A I P    L++G+G IG++T   A A G   ++I DV D +L V
Sbjct:   25 LGDDDVEIKIHTVGICGSDVHYYQHGRIGPFVVDEPMVLGHEASGVITAAGKNVKHLKVGDRVCMEPGIPDLQSPQSRAGIYNLDPAVRFWATPPIDGCLRESVIHPAAFTFKLPDNVSFAQGAMVEPLAIGMQSATKAGIKPGDIGLVIGAGTIGIITQ-SALAGGCSDVIICDVFDEKLKV 206          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: XYLD_AGRT5 (Putative D-xylulose reductase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=Atu4318 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.554e-41
Identity = 81/183 (44.26%), Postives = 114/183 (62.30%), Query Frame = 1
Query:  148 LGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            LGP DV +R   VG+CGSDVH+    ++  FVV  PMV+GHE +G + + GS+V  L  GDRV +EPGI        K G YN+ P  +   +PP+HGCL  +V+HPA   +KLPDNVS  EGAM EP ++G+ A  RA I P    ++ G+GPIG++  L A A G  ++++ D+   +L +
Sbjct:   28 LGPKDVRIRTHTVGICGSDVHYYTHGKIGHFVVNAPMVLGHEASGTVIETGSDVTHLKIGDRVCMEPGIPDPTSRASKLGIYNVDPAVRFWATPPIHGCLTPEVIHPAAFTYKLPDNVSFAEGAMVEPFAIGMQAALRARIQPGDIAVVTGAGPIGMMVALAALAGGCAKVIVADLAQPKLDI 210          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: YDJJ_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein ydjJ OS=Escherichia coli (strain K12) GN=ydjJ PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.122e-39
Identity = 84/209 (40.19%), Postives = 128/209 (61.24%), Query Frame = 1
Query:   85 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVV-KEP---MVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH-GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            N  A L    T+KI   E+P     +VL++++ VG+CGSDVH  ++     F+  K+P   + +GHECAG +  VGS V+   PGDRV +EPG+ C  C YC  G+YN+CP+   + + P + G L + + HP    +KLPDN+   EGA+ EP +VG+HA   A++ P   ++I+G+G IGL+T+   +  GA  I +VDV + RL++
Sbjct:    3 NSKAILQVPGTMKIISAEIPVPKEDEVLIKVEYVGICGSDVHGFES---GPFIPPKDPNQEIGLGHECAGTVVAVGSRVRKFKPGDRVNIEPGVPCGHCRYCLEGKYNICPDVDFMATQPNYRGALTHYLCHPESFTYKLPDNMDTMEGALVEPAAVGMHAAMLADVKPGKKIIILGAGCIGLMTLQACKCLGATEIAVVDVLEKRLAM 208          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: XYLD_RHILO (Putative D-xylulose reductase OS=Rhizobium loti GN=mlr4915 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.122e-39
Identity = 83/194 (42.78%), Postives = 117/194 (60.31%), Query Frame = 1
Query:  118 LKIQPLELP-SLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L ++ + LP  +GP DV + +  VGVCGSDVH+     +  +VV+ PMV+GHE AG + + G+ V+T   GDRV +EPG+        K G YN+ P+     +PPVHG LA   VHPA   +KLPDNVS  EGAM EP ++G+ A  RA I P    +++G GPIG++  L A A G  +++I D    +L +
Sbjct:   12 LSLREIALPLDVGPDDVKIAIHTVGVCGSDVHYYTHGAIGSYVVRAPMVLGHEAAGTVVETGANVETFKAGDRVCMEPGVPNLSSRATKLGIYNVDPDVSFWATPPVHGVLAPYAVHPAAFTYKLPDNVSFAEGAMVEPFAIGMQAASRARIVPGDVAVVVGCGPIGIMIALAALAGGCSKVLISDFSAPKLKI 205          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: XYL2_PICST (D-xylulose reductase OS=Pichia stipitis GN=XYL2 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.262e-39
Identity = 86/212 (40.57%), Postives = 123/212 (58.02%), Query Frame = 1
Query:   85 NMAAWLMGVNTLKIQPLELPSLG-PYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE-------SKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            N +  L  ++ +  +  + P +  P DVLV++K  G+CGSD+HF    R+ +FV+ +PMV+GHE AG + +VG  V +L  GD VA+EPGI     D  K G YNLCP        +   G P   G L      P D   KLPD+VSLE GA+ EPLSVGVHA +  ++     V + G+GP+GL+    A+ FGA  +++VD+ D +L +
Sbjct:    4 NPSLVLNKIDDISFETYDAPEISEPTDVLVQVKKTGICGSDIHFYAHGRIGNFVLTKPMVLGHESAGTVVQVGKGVTSLKVGDNVAIEPGIPSRFSDEYKSGHYNLCPHMAFAATPNSKEGEPNPPGTLCKYFKSPEDFLVKLPDHVSLELGALVEPLSVGVHASKLGSVAFGDYVAVFGAGPVGLLAAAVAKTFGAKGVIVVDIFDNKLKM 215          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: XYL2_YEAST (D-xylulose reductase OS=Saccharomyces cerevisiae GN=XYL2 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.270e-39
Identity = 82/179 (45.81%), Postives = 113/179 (63.13%), Query Frame = 1
Query:  154 PYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRL 690
            P +V++++KA G+CGSD+H+    R+A++VV+ PMV+GHE +G++  +G  VKTL  GDRVALEPGI        K GRYNL P  K   +PP  G L        D  +KLPD+VS EEGA+ EPLSV +HA + A I      ++ G+GPIGL+    A  FGA  +V VD+ + +L
Sbjct:   31 PNEVIIQIKATGICGSDIHYYTHGRIANYVVESPMVLGHESSGIVALIGENVKTLKVGDRVALEPGIPDRFSPEMKEGRYNLDPNLKFAATPPFDGTLTKYYKTMKDFVYKLPDDVSFEEGALIEPLSVAIHANKLAKIKFGARCVVFGAGPIGLLAGKVASVFGAADVVFVDLLENKL 209          
The following BLAST results are available for this feature:
BLAST of FC868560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
DHSO_BOMMO3.980e-4543.56Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 ... [more]
XYLD_RHIME7.506e-4448.09Putative D-xylulose reductase OS=Rhizobium melilot... [more]
DHSO1_YEAST3.153e-4242.86Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisi... [more]
DHSO2_YEAST1.565e-4142.36Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisi... [more]
XYLD_MORMO4.554e-4146.99D-xylulose reductase OS=Morganella morganii PE=1 S... [more]
XYLD_AGRT54.554e-4144.26Putative D-xylulose reductase OS=Agrobacterium tum... [more]
YDJJ_ECOLI1.122e-3940.19Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
XYLD_RHILO1.122e-3942.78Putative D-xylulose reductase OS=Rhizobium loti GN... [more]
XYL2_PICST4.262e-3940.57D-xylulose reductase OS=Pichia stipitis GN=XYL2 PE... [more]
XYL2_YEAST7.270e-3945.81D-xylulose reductase OS=Saccharomyces cerevisiae G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001H08EF AbioticL1 Citrus clementina cDNA clone C31001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868560 ID=FC868560; Name=FC868560; organism=Citrus clementina; type=EST; length=697bp
GGCACTTGTGTTTTTGAAGAGTGCAAAGCAAATATGGGCAAGGGAGGGAT
GTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGC
TTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTG
GGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAG
TGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAG
AGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGA
AGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGG
GATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGT
GTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCT
AATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGT
CAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATG
CCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGA
TCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGC
TCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTG
back to top