FC868560

Overview
NameFC868560
Unique NameFC868560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_PARUW (L-threonine 3-dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=tdh PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.385e-28
Identity = 78/194 (40.21%), Postives = 109/194 (56.19%), Query Frame = 1
Query:  118 LKIQPLELPS-LGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L ++ L +PS +   +VL++     +CG+DVH  K    A   V  P+VIGHE  G I + G  VK    G+RV  E  I C QC  C+ GR ++C  +KGLG   + GC A   V PA+  F LP ++S + GA+ +P    VH     N+  E +VLI G+GPIG++    A+  GA  IVI DV+DYRL +
Sbjct:   13 LWMENLPIPSHVKDDEVLIKTIKTSICGTDVHIYKWDAWAQKNVPVPLVIGHEFIGEIAEFGKNVKGFKIGERVCGEGHIVCNQCPNCRMGRKHVCMHTKGLGY-HISGCFAEYFVLPAENVFSLPPSISDDLGAIFDPYGNAVHTTLAFNLIGE-DVLITGAGPIGIMAAAIAKQAGARHIVITDVNDYRLDL 204          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_SHEAM (L-threonine 3-dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tdh PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.421e-28
Identity = 67/185 (36.22%), Postives = 104/185 (56.22%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  A+ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +
Sbjct:   21 PEMGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTTGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLEL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_BURXL (L-threonine 3-dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=tdh PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.421e-28
Identity = 70/193 (36.27%), Postives = 107/193 (55.44%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L +  ++ P +G  DV++R+    +CG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+P  +S +  A+ +P     H     N+  E +VLI G+GPIG++ +  A+  GA  +VI DV+DYRL +
Sbjct:   13 LTLTDVKKPEVGHNDVMIRITRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLVIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNLVGE-DVLITGAGPIGIMAVAIAKHVGARNVVITDVNDYRLEL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_BURPP (L-threonine 3-dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=tdh PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.421e-28
Identity = 70/193 (36.27%), Postives = 107/193 (55.44%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L +  ++ P +G  DV++R+    +CG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+P  +S +  A+ +P     H     N+  E +VLI G+GPIG++ +  A+  GA  +VI DV+DYRL +
Sbjct:   13 LTLTDVKKPEVGHNDVMIRITRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLVIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNLVGE-DVLITGAGPIGIMAVAIAKHVGARNVVITDVNDYRLEL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_SHEWM (L-threonine 3-dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=tdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.774e-28
Identity = 66/185 (35.68%), Postives = 104/185 (56.22%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +
Sbjct:   21 PEMGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVDIGQEVRGFSIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-DGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLEL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_SHESR (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain MR-7) GN=tdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.774e-28
Identity = 66/185 (35.68%), Postives = 104/185 (56.22%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P +G  D+L+++K   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLEL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_SHESM (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain MR-4) GN=tdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.774e-28
Identity = 66/185 (35.68%), Postives = 104/185 (56.22%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P +G  D+L+++K   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLEL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_SHESH (L-threonine 3-dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=tdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.774e-28
Identity = 66/185 (35.68%), Postives = 105/185 (56.76%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P +G  D+L++++   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +
Sbjct:   21 PEMGHNDLLIKIRKTAICGTDIHIYNWDEWSQKTIPVPMVVGHEYVGEVIDMGIEVRGFDVGDRVSGEGHITCGHCRNCRGGRTHLCRNTSGVGVNR-DGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLEL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_SHESA (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=tdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.774e-28
Identity = 66/185 (35.68%), Postives = 104/185 (56.22%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P +G  D+L+++K   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLEL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_SHEPC (L-threonine 3-dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.774e-28
Identity = 66/185 (35.68%), Postives = 104/185 (56.22%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P +G  D+L+++K   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLEL 203          
The following BLAST results are available for this feature:
BLAST of FC868560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
TDH_PARUW3.385e-2840.21L-threonine 3-dehydrogenase OS=Protochlamydia amoe... [more]
TDH_SHEAM4.421e-2836.22L-threonine 3-dehydrogenase OS=Shewanella amazonen... [more]
TDH_BURXL4.421e-2836.27L-threonine 3-dehydrogenase OS=Burkholderia xenovo... [more]
TDH_BURPP4.421e-2836.27L-threonine 3-dehydrogenase OS=Burkholderia phytof... [more]
TDH_SHEWM5.774e-2835.68L-threonine 3-dehydrogenase OS=Shewanella woodyi (... [more]
TDH_SHESR5.774e-2835.68L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHESM5.774e-2835.68L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHESH5.774e-2835.68L-threonine 3-dehydrogenase OS=Shewanella sedimini... [more]
TDH_SHESA5.774e-2835.68L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHEPC5.774e-2835.68L-threonine 3-dehydrogenase OS=Shewanella putrefac... [more]

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Properties
Property NameValue
Genbank descriptionC31001H08EF AbioticL1 Citrus clementina cDNA clone C31001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868560 ID=FC868560; Name=FC868560; organism=Citrus clementina; type=EST; length=697bp
GGCACTTGTGTTTTTGAAGAGTGCAAAGCAAATATGGGCAAGGGAGGGAT
GTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGC
TTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTG
GGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAG
TGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAG
AGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGA
AGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGG
GATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGT
GTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCT
AATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGT
CAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATG
CCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGA
TCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGC
TCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTG
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