FC868560

Overview
NameFC868560
Unique NameFC868560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_XANOR (L-threonine 3-dehydrogenase OS=Xanthomonas oryzae pv. oryzae GN=tdh PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27
Identity = 67/206 (32.52%), Postives = 108/206 (52.43%), Query Frame = 1
Query:   79 EVNMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            E N   WL        + + +P+ GP +VL++++   +CG+D+H       +   +K  + IGHE  G + ++GS V     G RV+ E  I C  C  C+GGR +LCP + G+G   V+G  A  +V PA   + +PD +  E  A  +P     H     ++  E +VLI G+GPIG++     +  GA  +V+ DV+D+RL +
Sbjct:    8 ETNKGIWL--------EQVPVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTIKPGLTIGHEFVGRVAELGSAVTGYQVGQRVSAEGHIVCGHCRNCRGGRPHLCPNTMGIG-VNVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFDVIGE-DVLITGAGPIGIIAAGICKHIGARNVVVTDVNDFRLKL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_XANOM (L-threonine 3-dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=tdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27
Identity = 67/206 (32.52%), Postives = 108/206 (52.43%), Query Frame = 1
Query:   79 EVNMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            E N   WL        + + +P+ GP +VL++++   +CG+D+H       +   +K  + IGHE  G + ++GS V     G RV+ E  I C  C  C+GGR +LCP + G+G   V+G  A  +V PA   + +PD +  E  A  +P     H     ++  E +VLI G+GPIG++     +  GA  +V+ DV+D+RL +
Sbjct:    8 ETNKGIWL--------EQVPVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTIKPGLTIGHEFVGRVAELGSAVTGYQVGQRVSAEGHIVCGHCRNCRGGRPHLCPNTMGIG-VNVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFDVIGE-DVLITGAGPIGIIAAGICKHIGARNVVVTDVNDFRLKL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_STRMK (L-threonine 3-dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=tdh PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.384e-27
Identity = 64/191 (33.51%), Postives = 104/191 (54.45%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            ++ + +P+ GP +VL++++   +CG+D+H       +   +K  + IGHE  G +  +GS V     G RV+ E  I C  C  C+GGR +LCP + G+G   V+G  A  +V PA   + +PD +  E  A  +P     H     N+  E +VLI G+GPIG++     +  GA  +V+ DV+D+RL +
Sbjct:   15 LEEVPVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTIKPGLTIGHEFVGRVAALGSAVTGYEIGQRVSAEGHIVCGHCRNCRGGRPHLCPNTVGIG-VNVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFNVIGE-DVLITGAGPIGIIAAGICKHIGARNVVVTDVNDFRLKL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_RHIE6 (L-threonine 3-dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=tdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 69/194 (35.57%), Postives = 111/194 (57.22%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L ++ + +P +GP DVL+R+K   +CG+DVH     + A   +  PMV+GHE +G I ++GS V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G     V  P      +PD++S E  A+ +P    VH     ++  E +VL+ G+GPIG++  L A+  GA ++VI D++ +RL +
Sbjct:   17 LWMEDVPVPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFGEFVCIPESNVVPIPDDISDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIMGALVAKRSGARKVVITDINPHRLDL 207          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_COXBU (L-threonine 3-dehydrogenase OS=Coxiella burnetii GN=tdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 68/186 (36.56%), Postives = 105/186 (56.45%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P  G  +VL+++K   +CG+D+H  K    A   +  PM +GHE  G I +VG     L  GDRV+ E  I+C  C  C+ G+ +LC  + G+G + P  G  A  +V PA   +K+P  +S +  A+ +P     H+    ++  E +VLI G+GP+GL++   AR  GA  +VI DV+DYRL++
Sbjct:   21 PKPGRDEVLIKIKKTAICGTDLHIYKWDEWAQKTIPVPMHVGHEFVGEIVEVGEAASALAVGDRVSGEGHITCGDCRNCRAGKRHLCRYTVGVGVNRP--GAFAEYLVIPAKNAYKIPAKISDDIAAILDPFGNAAHSALEFDLVGE-DVLITGAGPVGLMSAAIARHVGARHVVITDVNDYRLAL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_COXBR (L-threonine 3-dehydrogenase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=tdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 68/186 (36.56%), Postives = 105/186 (56.45%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P  G  +VL+++K   +CG+D+H  K    A   +  PM +GHE  G I +VG     L  GDRV+ E  I+C  C  C+ G+ +LC  + G+G + P  G  A  +V PA   +K+P  +S +  A+ +P     H+    ++  E +VLI G+GP+GL++   AR  GA  +VI DV+DYRL++
Sbjct:   21 PKPGRDEVLIKIKKTAICGTDLHIYKWDEWAQKTIPVPMHVGHEFVGEIVEVGEAASALAVGDRVSGEGHITCGDCRNCRAGKRHLCRYTVGVGVNRP--GAFAEYLVIPAKNAYKIPAKISDDIAAILDPFGNAAHSALEFDLVGE-DVLITGAGPVGLMSAAIARHVGARHVVITDVNDYRLAL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_COXBN (L-threonine 3-dehydrogenase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=tdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 68/186 (36.56%), Postives = 105/186 (56.45%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P  G  +VL+++K   +CG+D+H  K    A   +  PM +GHE  G I +VG     L  GDRV+ E  I+C  C  C+ G+ +LC  + G+G + P  G  A  +V PA   +K+P  +S +  A+ +P     H+    ++  E +VLI G+GP+GL++   AR  GA  +VI DV+DYRL++
Sbjct:   21 PKPGRDEVLIKIKKTAICGTDLHIYKWDEWAQKTIPVPMHVGHEFVGEIVEVGEAASALAVGDRVSGEGHITCGDCRNCRAGKRHLCRYTVGVGVNRP--GAFAEYLVIPAKNAYKIPAKISDDIAAILDPFGNAAHSALEFDLVGE-DVLITGAGPVGLMSAAIARHVGARHVVITDVNDYRLAL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_COXB2 (L-threonine 3-dehydrogenase OS=Coxiella burnetii (strain CbuG_Q212) GN=tdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 68/186 (36.56%), Postives = 105/186 (56.45%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P  G  +VL+++K   +CG+D+H  K    A   +  PM +GHE  G I +VG     L  GDRV+ E  I+C  C  C+ G+ +LC  + G+G + P  G  A  +V PA   +K+P  +S +  A+ +P     H+    ++  E +VLI G+GP+GL++   AR  GA  +VI DV+DYRL++
Sbjct:   21 PKPGRDEVLIKIKKTAICGTDLHIYKWDEWAQKTIPVPMHVGHEFVGEIVEVGEAASALAVGDRVSGEGHITCGDCRNCRAGKRHLCRYTVGVGVNRP--GAFAEYLVIPAKNAYKIPAKISDDIAAILDPFGNAAHSALEFDLVGE-DVLITGAGPVGLMSAAIARHVGARHVVITDVNDYRLAL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_RHIL3 (L-threonine 3-dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=tdh PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.089e-26
Identity = 69/194 (35.57%), Postives = 111/194 (57.22%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L ++ + +P +GP DVL+R+K   +CG+DVH     + A   +  PMV+GHE +G I ++GS V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G     V  P      +PD++S E  A+ +P    VH     ++  E +VL+ G+GPIG++  L A+  GA ++VI D++ +RL +
Sbjct:   17 LWMENVPVPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFGEFVCIPESNVVPIPDDISDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIMGALVAKRSGARKVVITDINPHRLEL 207          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_RHIEC (L-threonine 3-dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tdh PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.089e-26
Identity = 69/194 (35.57%), Postives = 111/194 (57.22%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L ++ + +P +GP DVL+R+K   +CG+DVH     + A   +  PMV+GHE +G I ++GS V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G     V  P      +PD++S E  A+ +P    VH     ++  E +VL+ G+GPIG++  L A+  GA ++VI D++ +RL +
Sbjct:   17 LWMENVPVPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFGEFVCIPESNVVPIPDDISDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIMGALVAKRSGARKVVITDINPHRLDL 207          
The following BLAST results are available for this feature:
BLAST of FC868560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
TDH_XANOR3.742e-2732.52L-threonine 3-dehydrogenase OS=Xanthomonas oryzae ... [more]
TDH_XANOM3.742e-2732.52L-threonine 3-dehydrogenase OS=Xanthomonas oryzae ... [more]
TDH_STRMK6.384e-2733.51L-threonine 3-dehydrogenase OS=Stenotrophomonas ma... [more]
TDH_RHIE68.337e-2735.57L-threonine 3-dehydrogenase OS=Rhizobium etli (str... [more]
TDH_COXBU8.337e-2736.56L-threonine 3-dehydrogenase OS=Coxiella burnetii G... [more]
TDH_COXBR8.337e-2736.56L-threonine 3-dehydrogenase OS=Coxiella burnetii (... [more]
TDH_COXBN8.337e-2736.56L-threonine 3-dehydrogenase OS=Coxiella burnetii (... [more]
TDH_COXB28.337e-2736.56L-threonine 3-dehydrogenase OS=Coxiella burnetii (... [more]
TDH_RHIL31.089e-2635.57L-threonine 3-dehydrogenase OS=Rhizobium leguminos... [more]
TDH_RHIEC1.089e-2635.57L-threonine 3-dehydrogenase OS=Rhizobium etli (str... [more]

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Properties
Property NameValue
Genbank descriptionC31001H08EF AbioticL1 Citrus clementina cDNA clone C31001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868560 ID=FC868560; Name=FC868560; organism=Citrus clementina; type=EST; length=697bp
GGCACTTGTGTTTTTGAAGAGTGCAAAGCAAATATGGGCAAGGGAGGGAT
GTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGC
TTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTG
GGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAG
TGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAG
AGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGA
AGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGG
GATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGT
GTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCT
AATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGT
CAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATG
CCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGA
TCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGC
TCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTG
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