FC868560

Overview
NameFC868560
Unique NameFC868560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHX_SPAAU (Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 61/220 (27.73%), Postives = 101/220 (45.91%), Query Frame = 1
Query:   94 AWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPP----VHGCLANQVVH------------PADLCF-KLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            AW  G   L I+ +E+     ++V +++ A GVC +D +   TL  +D     P+++GHE AG +E VG  V    PGD V       C +C +CK  + NLC +   ++G G  P       C   QV H             AD+   K+ +   +++  +   L  G+      A   A + P +   + G G +GL  ++G +  GA RI+ +D++
Sbjct:   15 AWEPG-KPLSIEEVEVAPPNAHEVRIKLFATGVCHTDAY---TLSGSDPEGLFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRITQGQGLLPDKTSRFTCKGKQVFHFMGTSTFSEYTVVADISLAKVNEKAPMDKVCL---LGCGISTGYGAALNTAKVEPGSTCAVFGLGAVGLAVIMGCKVAGATRIIGIDLN 227          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH1_ZYMMO (Alcohol dehydrogenase 1 OS=Zymomonas mobilis GN=adhA PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 54/204 (26.47%), Postives = 102/204 (50.00%), Query Frame = 1
Query:   91 AAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNV--SLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLS 693
            AA +   +T++++  +L  L   + L+ M+  GVC +D+H    ++  DF  +   + GHE  G++++VG  V +L  GDR ++      C  C+YC  G   LC   +  G   V G +A + +  AD   K+PD +  ++     C  ++    A + + I P   + I G G +G + +  A+     +++ +DV+D +L+
Sbjct:    3 AAVITKDHTIEVKDTKLRPLKYGEALLEMEYCGVCHTDLH----VKNGDFGDETGRITGHEGIGIVKQVGEGVTSLKVGDRASVAWFFKGCGHCEYCVSGNETLCRNVENAGY-TVDGAMAEECIVVADYSVKVPDGLDPAVASSITCAGVTT-YKAVKVSQIQPGQWLAIYGLGGLGNLALQYAKNVFNAKVIAIDVNDEQLA 200          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 59/209 (28.23%), Postives = 99/209 (47.37%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCP---ESKGLGSPP----VHGCLANQVVHPADLC----FKLPDNVSLEEGAMCEPL-SVGVHAC----------RRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            L I+ +++     ++V V++    VC +D +   TL   D     P+V+GHE AG++E +G  V  + PGD V L     C +C +C+ G+ NLC    E++G G  P       C    ++H         + +  ++SL   +   PL S+ +  C            A +   + V ++G G +GL  M GA A GA RI+ +D++
Sbjct:   22 LSIEDIQVAPPKAHEVRVKVDWSAVCHTDAY---TLSGVDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQGRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHSAKVESGSTVAVVGCGCVGLAAMQGAVAAGASRIIAIDIN 227          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH5_YEAST (Alcohol dehydrogenase 5 OS=Saccharomyces cerevisiae GN=ADH5 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 63/191 (32.98%), Postives = 96/191 (50.26%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLAD--FVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALE-PGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLGARAFGAPRIVIVD 672
            L+ + + +P   P ++LV +K  GVC SD+H        D  F +K P++ GHE AGV+ K+GS VK    GD   ++    +C  C+YC+ G  + CP   G G     G         A     +P NV+L E A  +C  ++V   A +RAN+ P   V I G+ G +G + +  A A G  R++ +D
Sbjct:   22 LEYKDVTVPEPKPNEILVHVKYSGVCHSDLHAWH----GDWPFQLKFPLIGGHEGAGVVVKLGSNVKGWKVGDFAGIKWLNGTCMSCEYCEVGNESQCPYLDGTGFTH-DGTFQEYATADAVQAAHIPPNVNLAEVAPILCAGITV-YKALKRANVIPGQWVTISGACGGLGSLAIQYALAMGY-RVIGID 205          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH5_SACPS (Alcohol dehydrogenase 5 OS=Saccharomyces pastorianus GN=ADH5 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 63/191 (32.98%), Postives = 96/191 (50.26%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLAD--FVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALE-PGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLGARAFGAPRIVIVD 672
            L+ + + +P   P ++LV +K  GVC SD+H        D  F +K P++ GHE AGV+ K+GS VK    GD   ++    +C  C+YC+ G  + CP   G G     G         A     +P NV+L E A  +C  ++V   A +RAN+ P   V I G+ G +G + +  A A G  R++ +D
Sbjct:   22 LEYKDVTVPEPKPNEILVHVKYSGVCHSDLHAWH----GDWPFQLKFPLIGGHEGAGVVVKLGSNVKGWKVGDFAGIKWLNGTCMSCEYCEVGNESQCPYLDGTGFTH-DGTFQEYATADAVQAAHIPPNVNLAEVAPILCAGITV-YKALKRANVIPGQWVTISGACGGLGSLAIQYALAMGY-RVIGID 205          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH1_ENTHI (NADP-dependent alcohol dehydrogenase OS=Entamoeba histolytica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 60/202 (29.70%), Postives = 91/202 (45.05%), Query Frame = 1
Query:  100 LMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKG----------GRYNLCPESKGLGSPPVHGCLANQVVHPADLCFK-LPDNVSLEEGAM-CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIV 669
            ++G+  +     ++P  GP D LVR  A+  C SD H +    + D   +  M++GHE  G I KVGS VK L  GD+V +      W  +  +           G +       G+ S   H       V+ AD     LP ++  E+  M  + ++ G H    ANI     V ++G GP+GL+++ GA   GA RI  V
Sbjct:    6 MLGIGRIGWIEKKIPECGPLDALVRPLALAPCTSDTHTVWAGAIGD---RHDMILGHEAVGQIVKVGSLVKRLKVGDKVIVPAITPDWGEEESQRGYPMHSGGMLGGWKFSNFKDGVFSEVFH-------VNEADANLALLPRDIKPEDAVMLSDMVTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAV 197          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH1S_HORSE (Alcohol dehydrogenase S chain OS=Equus caballus PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 58/212 (27.36%), Postives = 93/212 (43.87%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP----------------PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLS----VGV-------HACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            I+ +E+     ++V ++M A G+C SD H +    +A      P++ GHE AG++E +G  V T+ PGD+V       C +C  CK    NLC   K L  P                P+H  L           + + D +S+ +     PL     VG         A + A +   +   + G G +GL  ++G +A GA RI+ VD++
Sbjct:   24 IEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPL----PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC--LKNLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN 225          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: DOIAD_STRRI (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces ribosidificus GN=rbmC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 51/171 (29.82%), Postives = 76/171 (44.44%), Query Frame = 1
Query:  136 ELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFG 648
            ++P   P + LVR+    VCGSD+ F K +         P+V GHE +G +  V   +   + G  V  +  +SC  C +C      LC +   LG      C A  +  P     +LPD + L      EPL+V ++A  R  +     V +MG+G IGL+     R  G
Sbjct:   18 DIPDPAPGEALVRIAYNSVCGSDLSFYKGVWHGSTY---PVVPGHEWSGTVVDVNGPLGAELIGTNVVGDLTVSCGTCAHCTARTPTLCEDLGELGFTRDGAC-AEYMTIPVGNLRRLPDTLPLRAACQVEPLAVALNAVDRLGVTAGEKVAVMGAGGIGLLLAQAVRLRG 184          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHX_UROHA (Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 63/220 (28.64%), Postives = 101/220 (45.91%), Query Frame = 1
Query:   94 AWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPP----VHGCLANQVVH------------PADLCF-KLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            AW  G   L I+ +E+     ++V V++ A  VC +D +   TL  AD     P+++GHE AG++E VG  V    PGD V       C +C +C   + NLC +   ++G G  P       C   QV+H             AD+   K+  +  L++  +   L  GV      A   A + P +   + G G +GL  ++G +  GA RI+ +D++
Sbjct:   12 AWEAG-KPLSIEEIEVAPPKAHEVRVKIIATAVCHTDAY---TLSGADPEGSFPVILGHEGAGIVESVGEGVTKFKPGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGVMPDGTSRFTCKGKQVLHFMGTSTFSEYTVVADISLTKINASAPLDKVCL---LGCGVSTGYGAALNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDLN 224          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 60/195 (30.77%), Postives = 90/195 (46.15%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLANQ---VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +VL+++   GVC +D     TL   D     P+V+GHE AGV+ +VG  V ++ PGD V       C +C++C+ G+ NLC      + KGL           G P  H  GC       VV    L    P+        +   ++ G+ A    A + P+ +V + G G IGL  + GAR   A RI+ +D +
Sbjct:   29 EVLIKVTHTGVCHTDAF---TLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPDDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTN 220          
The following BLAST results are available for this feature:
BLAST of FC868560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
ADHX_SPAAU1.381e-1327.73Alcohol dehydrogenase class-3 OS=Sparus aurata PE=... [more]
ADH1_ZYMMO1.381e-1326.47Alcohol dehydrogenase 1 OS=Zymomonas mobilis GN=ad... [more]
FADH1_SCHPO1.803e-1328.23Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH5_YEAST1.803e-1332.98Alcohol dehydrogenase 5 OS=Saccharomyces cerevisia... [more]
ADH5_SACPS1.803e-1332.98Alcohol dehydrogenase 5 OS=Saccharomyces pastorian... [more]
ADH1_ENTHI2.355e-1329.70NADP-dependent alcohol dehydrogenase OS=Entamoeba ... [more]
ADH1S_HORSE2.355e-1327.36Alcohol dehydrogenase S chain OS=Equus caballus PE... [more]
DOIAD_STRRI3.076e-1329.822-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]
ADHX_UROHA3.076e-1328.64Alcohol dehydrogenase class-3 OS=Uromastyx hardwic... [more]
FRMA_ECOSM5.246e-1330.77S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001H08EF AbioticL1 Citrus clementina cDNA clone C31001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868560 ID=FC868560; Name=FC868560; organism=Citrus clementina; type=EST; length=697bp
GGCACTTGTGTTTTTGAAGAGTGCAAAGCAAATATGGGCAAGGGAGGGAT
GTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGC
TTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTG
GGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAG
TGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAG
AGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGA
AGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGG
GATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGT
GTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCT
AATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGT
CAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATG
CCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGA
TCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGC
TCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTG
back to top