FC868560

Overview
NameFC868560
Unique NameFC868560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:17..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHA_RHIME (Alcohol dehydrogenase OS=Rhizobium meliloti GN=adhA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 59/184 (32.07%), Postives = 87/184 (47.28%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVK--EPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI--SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGV---HACRRANIGPETNVLIMGSGPIGLVTMLGARAFG 648
            L I+ + +P  GP  VL++ +A GVC +D+H  K     D+ V+   P + GHE  G + K+G+EV  L  GDRV + P +  +C  C  C+ G   LC   +  G   V G  A   +   D   +LP    LE G     L  GV      +   + P   VL+ G G +G + +  A+A G
Sbjct:   15 LVIEEVPVPQPGPGQVLIKYEATGVCHTDLHAAK----GDWPVRPNPPFIPGHEGVGYVAKLGAEVTRLKEGDRVGV-PWLHTACGCCTPCRTGWETLCGSQQNTGY-SVDGTFAQYGLADPDFVGRLP--ARLEFGPAAPVLCAGVTVYKGLKETEVRPGEWVLVSGIGGLGHMAVQYAKAMG 190          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH3_EMENI (Alcohol dehydrogenase 3 OS=Emericella nidulans GN=alcC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 60/189 (31.75%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  139 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVV--KEPMVIGHECAGVIEKVGSEVK--TLVPGDRVALE-PGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLGARAFGAPRIVIVDVDD 681
            +P  GP ++LV+M+  GVC +D+H +K     D+ +  K P++ GHE AGV+   G  VK      GDR  ++    SC  C+ C      LCP +  L    V G      +  A L  K+PDNV L+  A  +C  ++V     + +   P   V I+G+ G +G +    A+A G   I I   D+
Sbjct:   26 VPKPGPDEILVKMRYSGVCHTDLHAMK----GDWPLPSKMPLIGGHEGAGVVVAKGELVKDEDFKIGDRAGIKWLNGSCLSCEMCMQADEPLCPHA-SLSGYTVDGTFQQYTIGKAALASKIPDNVPLDAAAPILCAGITV-YKGLKESGARPGQTVAIVGAGGGLGSLAQQYAKAMGLRTIAIDSGDE 208          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: DOIAD_MICEC (2-deoxy-scyllo-inosamine dehydrogenase OS=Micromonospora echinospora GN=gacH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 52/178 (29.21%), Postives = 84/178 (47.19%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDV 675
            P   P   +V++    +CGSD+   +     +   + P+V GHE AGV++      ++ V G  V  +  + C  C  C+ G   +C     +G     GC A  V  P    + LP+ + L   +  EPL+V +HA  R N+ P   V ++G+G IG + +  ARA GA   +  D+
Sbjct:   24 PEAPPGWAVVKVHYCCLCGSDLWLYRGKWHGN---RYPIVPGHEWAGVVDSAPEGYESWV-GRPVTGDLIVGCQGCGPCRDGLPVMCENLIEIGFTVDGGC-AGYVAVPITNLYLLPEGMDLAAASQTEPLAVALHAVDRINLRPAERVAVLGAGGIGQLILQSARATGATVTLATDL 196          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 61/217 (28.11%), Postives = 101/217 (46.54%), Query Frame = 1
Query:   94 AWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPPV----HGCLANQVVH------------PADLCF-KLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            AW  G   L I+ +E+     ++V +++ A  VC +D +   TL  AD     P+++GHE AG++E VG  V  L  GD V       C +C +C   + NLC +   ++G G  P       C    ++H             AD+   K+  +  L++  +    +S G  A    A + P +   + G G +GL  ++G +A GA RI+ VD++
Sbjct:   13 AWEAG-KPLSIEEIEVAPPKAHEVRIKIFATAVCHTDAY---TLSGADPEGCFPVILGHEGAGIVESVGEGVTNLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAALNTAKVEPGSTCAVFGLGGVGLAAIMGCKAAGASRIIAVDIN 225          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 57/183 (31.15%), Postives = 83/183 (45.36%), Query Frame = 1
Query:  145 SLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPE------SKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVI 666
            S G  DV +++   G+C SD+H +K           P+V GHE AGV+ +VG  V     GDRV +   + SC  C+ C  G  N CPE      S        +G  ++ VV         P+ + L+ GA  +C  ++V           P  +V ++G G +G V +  ARAFG    VI
Sbjct:   37 STGDDDVAIKILFCGICHSDLHCIKNEWKHSIY---PLVPGHEIAGVVTEVGKNVTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKHVGVLGLGGLGHVAVKFARAFGLKVTVI 216          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLANQ---VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +VL+++   GVC +D     TL   D     P+V+GHE AGV+ +VG  V ++ PGD V       C +C++C+ G+ NLC      + KGL           G P  H  GC       VV    L    P+        +   ++ G+ A    A + P  +V + G G IGL  + GAR   A RI+ +D +
Sbjct:   29 EVLIKVTHTGVCHTDAF---TLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTN 220          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 63/204 (30.88%), Postives = 93/204 (45.59%), Query Frame = 1
Query:  133 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLA---NQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +E+P  G  +VL+R    GVC +D     TL  +D     P+V+GHE AGV+  VG  V ++ PGD V       C +C++C+ G+ NLC      + KGL           G P  H  GC       VV    L    P+    +   +   ++ G+ A    A +    +V + G G IGL  + GAR   A RI+ +D +
Sbjct:   31 VEMPRKG--EVLIRNTHTGVCHTDAF---TLSGSDPEGVFPVVLGHEGAGVVVAVGEGVLSVKPGDHVIPLYTAECGECEFCRSGKTNLCVSVRDTQGKGLMPDCTTRFSYQGQPIYHYMGCSTFSEYSVVAEVSLAKINPEANHEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTN 229          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLANQ---VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +VL+++   GVC +D     TL   D     P+V+GHE AGV+ +VG  V ++ PGD V       C +C++C+ G+ NLC      + KGL           G P  H  GC       VV    L    P+        +   ++ G+ A    A + P  +V + G G IGL  + GAR   A RI+ +D +
Sbjct:   29 EVLIKVTHTGVCHTDAF---TLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTN 220          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLI (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain K12) GN=frmA PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLANQ---VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +VL+++   GVC +D     TL   D     P+V+GHE AGV+ +VG  V ++ PGD V       C +C++C+ G+ NLC      + KGL           G P  H  GC       VV    L    P+        +   ++ G+ A    A + P  +V + G G IGL  + GAR   A RI+ +D +
Sbjct:   29 EVLIKVTHTGVCHTDAF---TLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTN 220          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLC (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLANQ---VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +VL+++   GVC +D     TL   D     P+V+GHE AGV+ +VG  V ++ PGD V       C +C++C+ G+ NLC      + KGL           G P  H  GC       VV    L    P+        +   ++ G+ A    A + P  +V + G G IGL  + GAR   A RI+ +D +
Sbjct:   29 EVLIKVTHTGVCHTDAF---TLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTN 220          
The following BLAST results are available for this feature:
BLAST of FC868560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
ADHA_RHIME5.246e-1332.07Alcohol dehydrogenase OS=Rhizobium meliloti GN=adh... [more]
ADH3_EMENI5.246e-1331.75Alcohol dehydrogenase 3 OS=Emericella nidulans GN=... [more]
DOIAD_MICEC8.949e-1329.212-deoxy-scyllo-inosamine dehydrogenase OS=Micromon... [more]
ADHX_RABIT8.949e-1328.11Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]
CADH3_ORYSJ1.169e-1231.15Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
FRMA_SHISS1.526e-1230.77S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_HAEIN1.526e-1230.88S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
FRMA_ECOUT1.526e-1230.77S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOLI1.526e-1230.77S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOLC1.526e-1230.77S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC31001H08EF AbioticL1 Citrus clementina cDNA clone C31001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868560 ID=FC868560; Name=FC868560; organism=Citrus clementina; type=EST; length=697bp
GGCACTTGTGTTTTTGAAGAGTGCAAAGCAAATATGGGCAAGGGAGGGAT
GTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGC
TTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTG
GGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAG
TGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAG
AGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGA
AGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGG
GATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGT
GTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCT
AATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGT
CAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATG
CCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGA
TCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGC
TCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTG
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