FC868560

Overview
NameFC868560
Unique NameFC868560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:17..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL5 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLANQ---VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +VL+++   GVC +D     TL   D     P+V+GHE AGV+ +VG  V ++ PGD V       C +C++C+ G+ NLC      + KGL           G P  H  GC       VV    L    P+        +   ++ G+ A    A + P  +V + G G IGL  + GAR   A RI+ +D +
Sbjct:   29 EVLIKVTHTGVCHTDAF---TLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTN 220          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLANQ---VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +VL+++   GVC +D     TL   D     P+V+GHE AGV+ +VG  V ++ PGD V       C +C++C+ G+ NLC      + KGL           G P  H  GC       VV    L    P+        +   ++ G+ A    A + P  +V + G G IGL  + GAR   A RI+ +D +
Sbjct:   29 EVLIKVTHTGVCHTDAF---TLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTN 220          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLANQ---VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +VL+++   GVC +D     TL   D     P+V+GHE AGV+ +VG  V ++ PGD V       C +C++C+ G+ NLC      + KGL           G P  H  GC       VV    L    P+        +   ++ G+ A    A + P  +V + G G IGL  + GAR   A RI+ +D +
Sbjct:   29 EVLIKVTHTGVCHTDAF---TLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTN 220          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLANQ---VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +VL+++   GVC +D     TL   D     P+V+GHE AGV+ +VG  V ++ PGD V       C +C++C+ G+ NLC      + KGL           G P  H  GC       VV    L    P+        +   ++ G+ A    A + P  +V + G G IGL  + GAR   A RI+ +D +
Sbjct:   29 EVLIKVTHTGVCHTDAF---TLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTN 220          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLANQ---VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +VL+++   GVC +D     TL   D     P+V+GHE AGV+ +VG  V ++ PGD V       C +C++C+ G+ NLC      + KGL           G P  H  GC       VV    L    P+        +   ++ G+ A    A + P  +V + G G IGL  + GAR   A RI+ +D +
Sbjct:   29 EVLIKVTHTGVCHTDAF---TLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTN 220          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 52/206 (25.24%), Postives = 92/206 (44.66%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG--------------SPPVH-----GCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            I+ +E+      +V +++ A G+C +D H +K   ++ F    P+++GHE  G++E +G  V T+ PGD+V       C +C+ C+    NLC  S   G                PVH            V       K+ D    E+  +     S G  A  +   + P +  ++ G G +GL  ++G ++ GA RI+ +D++
Sbjct:   24 IEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSKF----PVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLN 225          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH_MYCTU (Probable alcohol dehydrogenase adh OS=Mycobacterium tuberculosis GN=adh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 62/200 (31.00%), Postives = 89/200 (44.50%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKT---LVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPPVH-------GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETN----VLIMGSGPIGLVTMLGARAFGAPRIVI 666
            L ++   LP +G  D LVR++A G+CG+D H   T  LA      P   GHE  G I  +G   +    +  GDRVA+E   SC QC  C+GG Y  C     +   G  PV        G    Q + P  +  ++  ++S E   +  PL  G+   R     PET     V ++G G  GL     A+  GA  +++
Sbjct:   18 LVVRQYRLPRIGDDDALVRVEACGLCGTD-HEQYTGELAGGFAFVP---GHETVGTIAAIGPRAEQRWGVSAGDRVAVEVFQSCRQCANCRGGEYRRCVRHGLADMYGFIPVDREPGLWGGYAEYQYLAPDSMVLRVAGDLSPEVATLFNPLGAGI---RWGVTIPETKPGDVVAVLGPGIRGLCAAAAAKGAGAGFVMV 210          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis GN=adhB PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 59/211 (27.96%), Postives = 96/211 (45.50%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLK-TLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL--GSPPVHGCL----ANQVVHPADL--------------CFKLPDNVSLEEGAM--CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYR 687
            ++ +E+      +V ++M+A G+C SD H +   + +A F    P++ GHE AG++ +VG  V    PGD V L    SC +C  C+ G  NLC    GL  G     G        Q V+P  L                K+  +V  E   +  C   +    A R A++ P  +V I+G G +G+  + GA + GA  +  V+  +++
Sbjct:   17 VEEIEIGDPRKDEVKIQMEAAGMCRSDHHLVTGDIPMAGF----PVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDLGAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAALQGAVSAGARYVFAVEPVEWK 223          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis GN=adhB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 59/211 (27.96%), Postives = 96/211 (45.50%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLK-TLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL--GSPPVHGCL----ANQVVHPADL--------------CFKLPDNVSLEEGAM--CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYR 687
            ++ +E+      +V ++M+A G+C SD H +   + +A F    P++ GHE AG++ +VG  V    PGD V L    SC +C  C+ G  NLC    GL  G     G        Q V+P  L                K+  +V  E   +  C   +    A R A++ P  +V I+G G +G+  + GA + GA  +  V+  +++
Sbjct:   17 VEEIEIGDPRKDEVKIQMEAAGMCRSDHHLVTGDIPMAGF----PVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDLGAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAALQGAVSAGARYVFAVEPVEWK 223          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 59/222 (26.58%), Postives = 96/222 (43.24%), Query Frame = 1
Query:   94 AWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQ-------------------------VVHPADLCFKLPDNVSLEEGAM--CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            AW  G + L I+ +E+      +V +++ A  VC +D++     + A F    P+V+GHECAG++E VG  V    PGD+V       C +C  C     NLC + +    P +   L                            VV  A+L  ++ D  +LE   +  C   S    A   A + P +   + G G +GL  ++G +  GA RI+ +D++
Sbjct:   15 AWKTG-SPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALF----PVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLA-RVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN 230          
The following BLAST results are available for this feature:
BLAST of FC868560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
FRMA_ECOL51.526e-1230.77S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOK11.526e-1230.77S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOHS1.526e-1230.77S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO571.526e-1230.77S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO241.526e-1230.77S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH7_HUMAN1.526e-1225.24Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
ADH_MYCTU1.994e-1231.00Probable alcohol dehydrogenase adh OS=Mycobacteriu... [more]
ADHB_MYCTU1.994e-1227.96Alcohol dehydrogenase B OS=Mycobacterium tuberculo... [more]
ADHB_MYCBO1.994e-1227.96Alcohol dehydrogenase B OS=Mycobacterium bovis GN=... [more]
ADH4_MOUSE1.994e-1226.58Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]

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Properties
Property NameValue
Genbank descriptionC31001H08EF AbioticL1 Citrus clementina cDNA clone C31001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868560 ID=FC868560; Name=FC868560; organism=Citrus clementina; type=EST; length=697bp
GGCACTTGTGTTTTTGAAGAGTGCAAAGCAAATATGGGCAAGGGAGGGAT
GTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGC
TTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTG
GGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAG
TGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAG
AGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGA
AGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGG
GATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGT
GTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCT
AATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGT
CAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATG
CCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGA
TCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGC
TCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTG
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