FC868560

Overview
NameFC868560
Unique NameFC868560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:17..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FDEH_PSEPU (5-exo-alcohol dehydrogenase OS=Pseudomonas putida GN=camD PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 61/212 (28.77%), Postives = 92/212 (43.40%), Query Frame = 1
Query:  121 KIQPLELPSLGPYD--VLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKT------LVPGDRVALEPGISCWQCDYCK--------GGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEE----GAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            +++  E+P   P     LVR+   GVCGSDVH +     A   +  P+++GHE  G IEK+G+ V T      +  GD V   P   C +C  C            +    +    GS     CL N +       ++LPD+   E     G     +  G   C    +G +  V++ G+GP+GL  +L A A GA  I+ +D    RL +
Sbjct:   14 RVETWEVPIFDPAPGGALVRVVLGGVCGSDVHIVSGEAGA---MPFPIILGHEGIGRIEKLGTGVTTDYAGVPVKQGDMVYWAPIALCHRCHSCTVLDETPWDNSTFFEHAQKPNWGSYADFACLPNGMAF-----YRLPDHAQPEALAALGCALPTVLRGYDRC--GPVGLDDTVVVQGAGPVGLAAVLVAAASGAKDIIAIDHSPIRLDM 215          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: DOIAD_STRSD (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces sp. (strain ATCC 17920 / DSM 40477 / NCIB 11028) GN=tobE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 52/171 (30.41%), Postives = 75/171 (43.86%), Query Frame = 1
Query:  136 ELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFG 648
            E+P   P + L+ +    +CGSD   L   R        P+V GHE +G + +V      LV  D V  +   +C  C  C  G   LC   + LG      C A  +  P      LP+ +SL      EP++V +HA     + P   V ++G+G IGL+ M  AR  G
Sbjct:   18 EVPVPAPGEALIHLGYNSICGSD---LSLYRGVWHGFSYPVVPGHEWSGTVVEVNGPGAELVGRDVVG-DLTCACGSCAACGRGTPVLCENLQELGFTRDGAC-AEYMTIPTGNLHVLPEGLSLRAACQVEPVAVALHAVSTVGVEPGERVAVLGAGGIGLMLMQVARQRG 183          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 64/208 (30.77%), Postives = 97/208 (46.63%), Query Frame = 1
Query:  133 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL------------GSPPVH--GC--LANQVVHPADLCFKLPDNVSLEEGAMCE---PLSVGVHA-CRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDD 681
            LE P  G  +V+V +KA G+C +D     TL  AD     P ++GHE AGV+ +VG  V ++ PG+ V       C QC  C  G+ NLC      + +GL            G+P  H  GC   +N  V P     K+ ++   ++  +C     ++ G+ A    A +      ++ G G IGL  + G R  GA  I+ VD++D
Sbjct:   22 LEGPKAG--EVMVEIKATGICHTDEF---TLSGADPEGLFPSILGHEGAGVVVEVGPGVTSVKPGNHVIPLYTPECRQCASCLSGKTNLCTAIRATQGQGLMPDGTSRFSMLDGTPIFHYMGCSTFSNYTVLPEIAVAKVREDAPFDK--ICYIGCGVTTGIGAVINTAKVEIGAKAVVFGLGGIGLNVLQGLRLAGADMIIGVDLND 222          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHX_OCTVU (Alcohol dehydrogenase class-3 OS=Octopus vulgaris PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 53/218 (24.31%), Postives = 101/218 (46.33%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPP----VHGCLANQVVH------------PADLCF-KLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L I+ +E+      +V +++   GVC +D + L+ +         P+++GHE AG++E +G  V ++ PGD V       C++C +C   + NLC +   ++G G  P       C   +V H             A++   K+    +L++  +   L  G+      A   A +   +N  + G G +GL   +G +A GA RI+ +D+++ +  +
Sbjct:   22 LSIEEVEVAPPKSGEVRIKILHSGVCHTDAYTLEGIDPEGIF---PVILGHEGAGIVESIGEGVTSVKPGDTVIPLYVPQCYECKFCLNPKTNLCQKIRVTQGKGVMPDGTTRFTCKGKEVFHFMGCSTFSEFTVVAEISIAKVNPKAALDKVCL---LGCGISTGYGAALNTAAVEKGSNCAVWGLGAVGLAVAMGCKAAGAARIIGIDINESKFEI 233          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 61/211 (28.91%), Postives = 92/211 (43.60%), Query Frame = 1
Query:   67 EDGEEVNMAAWLMGVNTLKIQPLELP--SLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLC-PESKGLGSPPVHGCLA-----NQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVI 666
            E    V    W    N+    P      + G  DV  R+   GVC SD+H +K       V   P+V GHE  G++ +VGS+V+ +  GD+V +   + SC QCD C     N C  +    G+P + G +A     + +V       + P+N  L+ GA  +C  ++            P   V + G G +G V +  A+AFG    VI
Sbjct:    6 ETEHPVKALGWAATDNSGTFSPFNFSRRATGERDVQFRVLYCGVCHSDLHMVKN---EWGVTHYPIVPGHEIVGIVTEVGSKVEKVKIGDKVGVGVLVGSCRQCDQCSNDLENYCYKQILTYGAPYLDGTIARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGGLGHVAVKFAKAFGTKVTVI 213          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 54/178 (30.34%), Postives = 85/178 (47.75%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADF-VVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPESKGLGSPP-----VHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVI 666
            DV +++   GVC SD+H +K     D+     P+V GHE AG++ KVGS V     GDRV +   + SC +C+ C+    + CP+     + P       G  ++ VV       + PDN+ L+ GA  +C  ++V           P  ++ + G G +G V +   +AFG    VI
Sbjct:   32 DVTLKILYCGVCHSDLHTVKN----DWGFTTYPVVPGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNSPYKGTRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVI 205          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 52/181 (28.73%), Postives = 87/181 (48.07%), Query Frame = 1
Query:  151 GPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPES-KGLGSP-----PVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVI 666
            G  DV  ++   G+C SD+H +K       +   P+V GHE  GV+ +VG++V     G++V +   + SC  CD C  G  N CP+S +  G P       +G  ++ +V       ++PDN+ L+  A  +C  ++V           P  ++ ++G G +G V +  A+A G    VI
Sbjct:   32 GEKDVRFKVLFCGICHSDLHMVKN---EWGMSTYPLVPGHEIVGVVTEVGAKVTKFKTGEKVGVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYDNTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVKFAKAMGTKVTVI 209          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 47/172 (27.33%), Postives = 77/172 (44.77%), Query Frame = 1
Query:  253 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESK----------------GLGSPPVHGCLANQ------VVHPADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P ++GHE AG++E VG  V  + PGD V       C +C +CK G+ NLC + +                 +   P++  +         VVH   +  K+     L++  +    +S G+ A    A +   + V I G G +GL    GA++ GA RI+ +D+D  +  V
Sbjct:   66 PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA-KINPQAPLDKVCLLGCGVSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDV 236          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 47/172 (27.33%), Postives = 77/172 (44.77%), Query Frame = 1
Query:  253 PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESK----------------GLGSPPVHGCLANQ------VVHPADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P ++GHE AG++E VG  V  + PGD V       C +C +CK G+ NLC + +                 +   P++  +         VVH   +  K+     L++  +    +S G+ A    A +   + V I G G +GL    GA++ GA RI+ +D+D  +  V
Sbjct:   66 PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA-KINPQAPLDKVCLLGCGVSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDV 236          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 60/221 (27.15%), Postives = 96/221 (43.44%), Query Frame = 1
Query:   94 AWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCP----ESKGL------------GSPPVHGCLANQ-----VVHPADLCFKLPDNVSLEEGAMCEPLSVGV-----HACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            AW  G   L ++ +E+    P ++ +++    +C SD+   ++  L       P + GHE AG++E +G  V     GD V       C  C +C  G+ N+C     E KGL            G P  H C  +      VVH +    K+     L +  +   LS GV      A   A++   ++V+I G G +GL    GA+  GA +I+ VD++
Sbjct:   21 AWRAG-EPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQSLL------PRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERKGLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVH-SGCAVKVDPLAPLHKICL---LSCGVAAGLGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDIN 230          
The following BLAST results are available for this feature:
BLAST of FC868560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
FDEH_PSEPU1.292e-1128.775-exo-alcohol dehydrogenase OS=Pseudomonas putida ... [more]
DOIAD_STRSD1.292e-1130.412-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]
FADH_PARDE2.204e-1130.77S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
ADHX_OCTVU2.204e-1124.31Alcohol dehydrogenase class-3 OS=Octopus vulgaris ... [more]
GEDH1_OCIBA2.879e-1128.91Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
MTDH1_STYHU3.760e-1130.34Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CADH8_ARATH6.413e-1128.73Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
ADHX_ORYSJ6.413e-1127.33Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ORYSI6.413e-1127.33Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHL6_ARATH6.413e-1127.15Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC31001H08EF AbioticL1 Citrus clementina cDNA clone C31001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868560 ID=FC868560; Name=FC868560; organism=Citrus clementina; type=EST; length=697bp
GGCACTTGTGTTTTTGAAGAGTGCAAAGCAAATATGGGCAAGGGAGGGAT
GTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGC
TTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTG
GGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAG
TGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAG
AGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGA
AGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGG
GATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGT
GTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCT
AATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGT
CAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATG
CCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGA
TCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGC
TCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTG
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