FC868563

Overview
NameFC868563
Unique NameFC868563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.366e-40
Identity = 79/125 (63.20%), Postives = 96/125 (76.80%), Query Frame = 2
Query:  257 KIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLTWNYITYG 619
            KIISR MF+ +L++RN+  CPA+ FYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT HETTGGWP AP G YAWGYCF +E    SS+YC   P YPC  GK YYGRGP+QL+WNY  YG
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERN-PSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNY-NYG 126          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.934e-38
Identity = 80/187 (42.78%), Postives = 100/187 (53.48%), Query Frame = 2
Query:   71 GGSAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP----NYPCRGKYYGRGPIQLTWNYITYG 619
            G  AGN      CP   CCS  G+CGLT+ +CC GC S C                         +  MFE +L  RN+  CP + FYTYDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC   E+   +SDYCDP    +YPC   YYGRGP+QL WNY  YG
Sbjct:   27 GSQAGNA----TCPNDLCCSSGGYCGLTVAYCCAGCVSQCRNC--------------------FFTESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELN-PNSDYCDPKTKSSYPCVADYYGRGPLQLRWNY-NYG 187          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.124e-37
Identity = 75/129 (58.14%), Postives = 92/129 (71.32%), Query Frame = 2
Query:  245 GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLTWNYITYG 619
            G +  I+SR  F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYCF +E G ASSDYC P+  +PC    +YYGRGPIQL+ NY  YG
Sbjct:   23 GSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNY-NYG 149          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.618e-36
Identity = 74/129 (57.36%), Postives = 91/129 (70.54%), Query Frame = 2
Query:  245 GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLTWNYITYG 619
            G +  IIS   F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYCF +E GAA +DYC P+  +PC    +YYGRGPIQL+ NY  YG
Sbjct:   23 GSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAA-ADYCTPSAQWPCAPGKRYYGRGPIQLSHNY-NYG 149          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.106e-35
Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 2
Query:  251 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR--GKYYGRGPIQLTWNYITYGA 622
            +  +IS+ +FE +L +RND+ C A+ FYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+NRE G +  DYC     +PC    KY+GRGPIQ+++NY  YGA
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQG-SPGDYCASSQQWPCAPGKKYFGRGPIQISYNY-NYGA 130          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.964e-31
Identity = 66/127 (51.97%), Postives = 79/127 (62.20%), Query Frame = 2
Query:  227 GTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNY 607
            G +G    +G II+R MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC   E+            P    YYGRGPIQLT  Y
Sbjct:   19 GASGQQAGVGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEI-----------TPSDPPYYGRGPIQLTHKY 133          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.899e-30
Identity = 67/143 (46.85%), Postives = 86/143 (60.14%), Query Frame = 2
Query:  227 GTAGDGG------ELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD------PNYPCRGKYYGRGPIQLTWNYITYG 619
            G  G GG       +  I+S +++  L  +++D  CPAR FYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG C+  E+   SS YCD      P YP +  Y+GRGPIQ++WN+  YG
Sbjct:   35 GGGGGGGYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSS-YCDATDKQWPCYPGK-SYHGRGPIQISWNF-NYG 174          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 2
Query:  248 ELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLT 598
            ++G I++ ++F ++L+ RND RCPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   A  G +A GYCF RE     S            +YGRGPIQLT
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSG-----------FYGRGPIQLT 122          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 69/186 (37.10%), Postives = 96/186 (51.61%), Query Frame = 2
Query:   77 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP---NYPCRG--KYYGRGPIQLTWNYITYG 619
            +A NCG    C    CCS+FG+CG T ++C DGCQS      C       G+ G G  +  +++   F  + + +    C  + FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +C+  E+   S+ YCDP    +PC    KYYGRGP+Q++WNY  YG
Sbjct:   19 AAQNCG----CQPNVCCSKFGYCGTTDEYCGDGCQSG----PCRSGRGGGGSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEIN-KSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNY-NYG 180          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.759e-27
Identity = 59/115 (51.30%), Postives = 76/115 (66.09%), Query Frame = 2
Query:  254 GKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLT 598
            G I++RE+FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF R++  +             +YYGRGPIQLT
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD------------RYYGRGPIQLT 126          
The following BLAST results are available for this feature:
BLAST of FC868563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_CARPA2.366e-4063.20Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI8_POPTR4.934e-3842.78Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI2_HORVU7.124e-3758.1426 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIC_SECCE4.618e-3657.36Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHID_SOLLC5.106e-3554.69Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI11_ORYSJ9.964e-3151.97Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI10_ORYSJ2.899e-3046.85Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC1.031e-2752.99Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_MAIZE1.031e-2737.10Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_SOLCI1.759e-2751.30Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]

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Properties
Property NameValue
Genbank descriptionC31001H11EF AbioticL1 Citrus clementina cDNA clone C31001H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868563 ID=FC868563; Name=FC868563; organism=Citrus clementina; type=EST; length=622bp
ANCTGTTGCTTTCAAAATGAGGCTTATTGCGTCCTTACTAATTTTCTCTC
TGGTTTTATCTTTTGTACTAGGAGGCTCAGCAGGGAACTGTGGAAGCGGC
GTTGTGTGCCCAGGAGGGGAGTGTTGTAGTCGATTTGGTTGGTGTGGCCT
AACAATAGACCACTGTTGTGACGGCTGCCAAAGTAACTGTAATCAGGTTG
TTTGCGGTGAATGTGATCCCGACGACGGGACGGCTGGTGATGGCGGTGAA
CTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTGAGTATAG
AAATGATAAACGATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTA
TAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACC
ATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAAC
TACTGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATT
GCTTTAATAGGGAAGTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAAC
TATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTG
GAATTACATTACTTACGGTGCG
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