FC868563

Overview
NameFC868563
Unique NameFC868563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:30..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.296e-24
Identity = 69/187 (36.90%), Postives = 92/187 (49.20%), Query Frame = 2
Query:   77 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPCRGK--YYGRGPIQLTWNYITYG 619
            SA NCG    C  G CCS++G+CG   D+C  GCQ    Q  C    P      +      I++ +    +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC     Y+GRGPIQL+WN+  YG
Sbjct:   22 SAQNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNF-NYG 181          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.916e-24
Identity = 57/105 (54.29%), Postives = 67/105 (63.81%), Query Frame = 2
Query:   74 GSAGNCG---SGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 370
            GSA  CG      +CPGG CCS +GWCG T+D+C DGCQS C+    G+ CD   G  GDG  G L  II +  F+ LL++RND RC A  FYTYDAFI AAK F
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.916e-24
Identity = 67/191 (35.08%), Postives = 96/191 (50.26%), Query Frame = 2
Query:   77 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSN-C----NQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPIQLTWNYITYG 619
            +A NCG    C  G CCS++G+CG T  +C  GCQS  C     +   G      G AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q++WN+  YG
Sbjct:   26 AAQNCG----CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAG-AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNF-NYG 196          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.483e-23
Identity = 59/124 (47.58%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  251 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYITYGA 622
            +  +IS  +FE +L +R         FYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT HETTGGWP AP G Y        E+G+ S             Y+GRGPIQ+++NY  YGA
Sbjct:    1 VSSVISSSLFEKMLLHRG--------FYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSD------------YFGRGPIQISYNY-NYGA 95          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.704e-22
Identity = 72/193 (37.31%), Postives = 87/193 (45.08%), Query Frame = 2
Query:   80 AGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDD----------GTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYCDPN----YPCRG--KYYGRGPIQLTWNY 607
            A NCG    C    CCS FG+CG    +C  G   NC    C    P            GT G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C   E  G     YCD +    YPC    KYYGRGP+QL+WNY
Sbjct:   27 AQNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNY 196          
BLAST of FC868563 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.474e-22
Identity = 62/167 (37.13%), Postives = 85/167 (50.90%), Query Frame = 2
Query:  122 CCSRFGWCGLTIDHCCDGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC--RGKYYGRGPIQLTWNY 607
            CCS+ G+CG + D+C  GCQ+       G C DP +G   DG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QL+WNY
Sbjct:   11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNY 154          
The following BLAST results are available for this feature:
BLAST of FC868563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_PHAVU5.296e-2436.90Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIC_POPTR6.916e-2454.29Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]
CHI4_ORYSJ6.916e-2435.08Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_AVESA4.483e-2347.58Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHIP_BETVU1.704e-2237.31Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA6.474e-2237.13Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC31001H11EF AbioticL1 Citrus clementina cDNA clone C31001H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868563 ID=FC868563; Name=FC868563; organism=Citrus clementina; type=EST; length=622bp
ANCTGTTGCTTTCAAAATGAGGCTTATTGCGTCCTTACTAATTTTCTCTC
TGGTTTTATCTTTTGTACTAGGAGGCTCAGCAGGGAACTGTGGAAGCGGC
GTTGTGTGCCCAGGAGGGGAGTGTTGTAGTCGATTTGGTTGGTGTGGCCT
AACAATAGACCACTGTTGTGACGGCTGCCAAAGTAACTGTAATCAGGTTG
TTTGCGGTGAATGTGATCCCGACGACGGGACGGCTGGTGATGGCGGTGAA
CTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTGAGTATAG
AAATGATAAACGATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTA
TAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACC
ATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAAC
TACTGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATT
GCTTTAATAGGGAAGTTGGCGCTGCGTCGTCCGACTACTGTGATCCTAAC
TATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTG
GAATTACATTACTTACGGTGCG
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