FC868581

Overview
NameFC868581
Unique NameFC868581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig683 contig Ccv1_Contig683:16..360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ANAVT (Glycine dehydrogenase [decarboxylating] OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gcvP PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.277e-36
Identity = 73/115 (63.48%), Postives = 92/115 (80.00%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HPV+ +G  P     Q +G +AAAPWGSA IL IS+ YIAMMG+ GLT+A+K+AILNANY+AKRLE +YP+L++G NG VAHE I+DLR LK +A IE +D+AKRL+DYGFH
Sbjct:  748 LPGHPVLGSGKNP-----QNIGAVAAAPWGSASILVISWMYIAMMGADGLTQATKVAILNANYIAKRLETYYPVLYKGQNGLVAHECILDLRALKKSANIEIDDIAKRLIDYGFH 857          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_NOSP7 (Glycine dehydrogenase [decarboxylating] OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gcvP PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.928e-35
Identity = 73/115 (63.48%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HPVV+   I    +   +G +AAAPWGSA IL IS+ YIAMMG+ GLT+A+K+AILNANY+AK+LE +YP+L++G NG VAHE I+DLR LK +A IE +DVAKRLMDYGFH
Sbjct:  750 LPGHPVVT---INDSTQHSHIGAVAAAPWGSASILVISWMYIAMMGADGLTQATKVAILNANYIAKKLESYYPVLYQGKNGLVAHECILDLRSLKKSAAIEIDDVAKRLMDYGFH 861          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_HUMAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Homo sapiens GN=GLDC PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.928e-35
Identity = 73/115 (63.48%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP+HPV+S   +   E + P+GT++AAPWGS+ ILPIS+ YI MMG KGL +A++ AILNANYMAKRLE HY ILFRG  G V HEFI+D R  K +A IE  DVAKRL DYGFH
Sbjct:  780 LPNHPVIS---LKRNEDACPVGTVSAAPWGSSSILPISWAYIKMMGGKGLKQATETAILNANYMAKRLETHYRILFRGARGYVGHEFILDTRPFKKSANIEAVDVAKRLQDYGFH 891          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ANASP (Glycine dehydrogenase [decarboxylating] OS=Anabaena sp. (strain PCC 7120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.325e-35
Identity = 70/115 (60.87%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HPV+ +G  P     Q +G +AAAPWGSA IL IS+ YI MMG+ GLT+A+K+AILNANY+AK+L  +YP+L++G NG VAHE I+DLR LK +A IE +D+AKRL+DYGFH
Sbjct:  757 LPGHPVLESGKNP-----QNIGAVAAAPWGSASILVISWMYIVMMGADGLTQATKVAILNANYIAKKLAAYYPVLYKGQNGLVAHECILDLRALKKSANIEIDDIAKRLIDYGFH 866          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_PROMM (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvP PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.131e-34
Identity = 69/115 (60.00%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HP+ + GG       Q +G I+AAPWGSA ILPIS+ Y+ MMG++GL +AS +A+L+ANY+A RL  HYP+LFRG  G VAHE I+DLR LK +AG+E +D+AKRLMDYGFH
Sbjct:  727 LPGHPLAACGG------EQGIGAISAAPWGSAGILPISWMYLRMMGAEGLRQASAVALLSANYLAHRLHPHYPVLFRGQAGLVAHECILDLRPLKRSAGLEVDDIAKRLMDYGFH 835          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_PROM3 (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvP PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.131e-34
Identity = 69/115 (60.00%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HP+ + GG       Q +G I+AAPWGSA ILPIS+ Y+ MMG++GL +AS +A+L+ANY+A RL  HYP+LFRG  G VAHE I+DLR LK +AG+E +D+AKRLMDYGFH
Sbjct:  747 LPGHPLAACGG------EQGIGAISAAPWGSAGILPISWMYLRMMGAEGLRQASAVALLSANYLAHRLHPHYPVLFRGQAGLVAHECILDLRPLKRSAGLEVDDIAKRLMDYGFH 855          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_SYNR3 (Glycine dehydrogenase [decarboxylating] OS=Synechococcus sp. (strain RCC307) GN=gcvP PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.356e-33
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HP+V  GG       Q +G ++AAPWGSA ILPIS+ YI +MG  GL +A+ +A+L AN +A+RLE H+P+L+RG NG VAHE I+DLR LK +AG+E +D+AKRLMDYGFH
Sbjct:  728 LPGHPLVPCGG------EQAIGPVSAAPWGSASILPISWMYIRLMGGAGLRQATAVALLAANDLAERLEPHFPVLYRGANGRVAHECILDLRPLKRSAGLEVDDLAKRLMDYGFH 836          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_THEEB (Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.169e-32
Identity = 65/94 (69.15%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            G + AAPWGSA ILPIS+ YI +MG  GLT A+ IAILNANY+AKRLE +YP+L++G +G VAHE I+DLR LK +AGIE ED+AKRLMDYGFH
Sbjct:  745 GPVTAAPWGSASILPISWMYITLMGGVGLTRATAIAILNANYIAKRLEPYYPVLYKGAHGLVAHECILDLRPLKKSAGIEVEDIAKRLMDYGFH 838          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_SYNY3 (Glycine dehydrogenase [decarboxylating] OS=Synechocystis sp. (strain PCC 6803) GN=gcvP PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.605e-32
Identity = 73/115 (63.48%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP   + ST  + A ++S  +G I+AAP+GSA IL IS+ YIAMMG +GLT+A+++AIL+ANYMAKRLE +YPILFRG N  VAHE I+DLR LK  A IE EDVAKRLMD+GFH
Sbjct:  752 LPRTSLNSTAELQAEDQS--IGMISAAPYGSASILVISWMYIAMMGPQGLTKATEVAILSANYMAKRLENYYPILFRGNNELVAHECILDLRPLKKQAAIEVEDVAKRLMDFGFH 864          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_PROMT (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain NATL2A) GN=gcvP PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.605e-32
Identity = 70/115 (60.87%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP H ++  GG  A      +  ++AAP+GSA ILPIS+ YI MMGS GL +AS IAIL+ANY+AKRL+ +YP+LF+  NG VAHE I+DLR LK+  GIE EDVAKRLMDYGFH
Sbjct:  738 LPGHSIIKCGGQKA------ISAVSAAPFGSAGILPISWMYIRMMGSDGLRKASSIAILSANYLAKRLDPYYPVLFKDPNGLVAHECILDLRPLKSQLGIEVEDVAKRLMDYGFH 846          
The following BLAST results are available for this feature:
BLAST of FC868581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
GCSP_ANAVT2.277e-3663.48Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_NOSP71.928e-3563.48Glycine dehydrogenase [decarboxylating] OS=Nostoc ... [more]
GCSP_HUMAN1.928e-3563.48Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_ANASP7.325e-3560.87Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_PROMM2.131e-3460.00Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_PROM32.131e-3460.00Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_SYNR32.356e-3358.26Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_THEEB1.169e-3269.15Glycine dehydrogenase [decarboxylating] OS=Thermos... [more]
GCSP_SYNY32.605e-3263.48Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_PROMT2.605e-3260.87Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionC31002B11EF AbioticL1 Citrus clementina cDNA clone C31002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868581 ID=FC868581; Name=FC868581; organism=Citrus clementina; type=EST; length=345bp
CTGCCCTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCAT
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