FC868581

Overview
NameFC868581
Unique NameFC868581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_SALHS (Glycine dehydrogenase [decarboxylating] OS=Salmonella heidelberg (strain SL476) GN=gcvP PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.282e-28
Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  YP+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKQASQVAILNANYIASRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_SALG2 (Glycine dehydrogenase [decarboxylating] OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=gcvP PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.282e-28
Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  YP+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKQASQVAILNANYIASRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_SALEP (Glycine dehydrogenase [decarboxylating] OS=Salmonella enteritidis PT4 (strain P125109) GN=gcvP PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.282e-28
Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  YP+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKQASQVAILNANYIASRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_SALDC (Glycine dehydrogenase [decarboxylating] OS=Salmonella dublin (strain CT_02021853) GN=gcvP PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.282e-28
Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  YP+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKQASQVAILNANYIASRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_PELUB (Glycine dehydrogenase [decarboxylating] OS=Pelagibacter ubique GN=gcvP PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.282e-28
Identity = 59/115 (51.30%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP H V+   G         +G ++AAPWGS+ IL IS+ YI MMGS+GL +AS++AILNANY+A +L+  +PIL++G +G VAHE I+D+R +K+  GI  ED+AKRL+D+G+H
Sbjct:  722 LPKHSVIKDCG-----PVTGMGAVSAAPWGSSSILSISWMYIKMMGSEGLRKASQVAILNANYIAHKLKDSFPILYKGKSGNVAHECIIDIRTIKSETGITEEDIAKRLIDFGYH 831          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ENTS8 (Glycine dehydrogenase [decarboxylating] OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=gcvP PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.282e-28
Identity = 63/115 (54.78%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMGS+GL +AS+ AILNANY+A RL+  YP+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTSQ-----GAVSAAPFGSASILPISWMYIRMMGSQGLKKASQTAILNANYIASRLKDAYPVLYTGRDGRVAHECILDIRPLKEATGISELDIAKRLIDYGFH 843          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ENT38 (Glycine dehydrogenase [decarboxylating] OS=Enterobacter sp. (strain 638) GN=gcvP PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.282e-28
Identity = 62/115 (53.91%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  YP+L+ G +G VAHE I+D+R LK+  GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKQASQVAILNANYIATRLKDAYPVLYTGRDGRVAHECILDIRPLKDDTGISELDIAKRLIDYGFH 843          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_CITK8 (Glycine dehydrogenase [decarboxylating] OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=gcvP PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.282e-28
Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  YP+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKQASQVAILNANYIASRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_RALPJ (Glycine dehydrogenase [decarboxylating] OS=Ralstonia pickettii (strain 12J) GN=gcvP PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.981e-28
Identity = 58/100 (58.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:   46 EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            + SQ +G ++A+ +GSA ILPIS+ YIAMMG+ GLT A++ AIL+ANY+AKRL  +YP+L+ G +G VAHE I+D+R L+  +GI  ED+AKRLMD+GFH
Sbjct:  761 DASQNIGNVSASAFGSASILPISWMYIAMMGAAGLTAATETAILSANYVAKRLAPYYPVLYTGAHGLVAHECILDIRPLQKESGISNEDIAKRLMDFGFH 860          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_SALA4 (Glycine dehydrogenase [decarboxylating] OS=Salmonella agona (strain SL483) GN=gcvP PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.893e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++G+ +AS++AILNANY+A RL+  YP+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGMKQASQVAILNANYIASRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843          
The following BLAST results are available for this feature:
BLAST of FC868581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
GCSP_SALHS2.282e-2853.91Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_SALG22.282e-2853.91Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_SALEP2.282e-2853.91Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_SALDC2.282e-2853.91Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]
GCSP_PELUB2.282e-2851.30Glycine dehydrogenase [decarboxylating] OS=Pelagib... [more]
GCSP_ENTS82.282e-2854.78Glycine dehydrogenase [decarboxylating] OS=Enterob... [more]
GCSP_ENT382.282e-2853.91Glycine dehydrogenase [decarboxylating] OS=Enterob... [more]
GCSP_CITK82.282e-2853.91Glycine dehydrogenase [decarboxylating] OS=Citroba... [more]
GCSP_RALPJ2.981e-2858.00Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_SALA43.893e-2853.04Glycine dehydrogenase [decarboxylating] OS=Salmone... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31002B11EF AbioticL1 Citrus clementina cDNA clone C31002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868581 ID=FC868581; Name=FC868581; organism=Citrus clementina; type=EST; length=345bp
CTGCCCTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCAT
back to top