FC868581

Overview
NameFC868581
Unique NameFC868581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_PROMA (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 58/102 (56.86%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:   40 APEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            A + +  +G I+A+P GSA ILPIS+ YI MMG+ GL +AS +AIL+ANY+A +L+ ++ +LF+  NG VAHE I+DLR +K   GIE +DVAKRLMDYGFH
Sbjct:  744 ASDNNAAIGAISASPLGSASILPISWMYIRMMGADGLRQASSLAILSANYIANKLDPYFQVLFKAPNGKVAHECILDLRSIKRITGIEVDDVAKRLMDYGFH 845
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ESCF3 (Glycine dehydrogenase [decarboxylating] OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECOUT (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain UTI89 / UPEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECOSM (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECOSE (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain SE11) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECOLU (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECOLI (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain K12) GN=gcvP PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECOLC (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECOL6 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O6 GN=gcvP PE=3 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECOL5 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
The following BLAST results are available for this feature:
BLAST of FC868581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
GCSP_PROMA6.641e-2856.86Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_ESCF36.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOUT6.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOSM6.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOSE6.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOLU6.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOLI6.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOLC6.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOL66.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOL56.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionC31002B11EF AbioticL1 Citrus clementina cDNA clone C31002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868581 ID=FC868581; Name=FC868581; organism=Citrus clementina; type=EST; length=345bp
CTGCCCTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCAT
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