FC868581

Overview
NameFC868581
Unique NameFC868581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECOK1 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O1:K1 / APEC GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECOHS (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O9:H4 (strain HS) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECODH (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain K12 / DH10B) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECOBW (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain K12 / BW2952) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECO8A (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O8 (strain IAI1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECO81 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O81 (strain ED1a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECO7I (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECO5E (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECO57 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli O157:H7 GN=gcvP PE=3 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ECO55 (Glycine dehydrogenase [decarboxylating] OS=Escherichia coli (strain 55989 / EAEC) GN=gcvP PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL+  +P+L+ G +G VAHE I+D+R LK   GI   D+AKRL+DYGFH
Sbjct:  734 VPGHSVVQIEGMLTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFH 843
The following BLAST results are available for this feature:
BLAST of FC868581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
GCSP_ECOK16.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOHS6.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECODH6.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECOBW6.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO8A6.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO816.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO7I6.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO5E6.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO576.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]
GCSP_ECO556.641e-2853.04Glycine dehydrogenase [decarboxylating] OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionC31002B11EF AbioticL1 Citrus clementina cDNA clone C31002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868581 ID=FC868581; Name=FC868581; organism=Citrus clementina; type=EST; length=345bp
CTGCCCTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCAT
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