FC868581

Overview
NameFC868581
Unique NameFC868581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_PROM1 (Glycine dehydrogenase [decarboxylating] OS=Prochlorococcus marinus (strain NATL1A) GN=gcvP PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.605e-32
Identity = 70/115 (60.87%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP H ++  GG  A      +  ++AAP+GSA ILPIS+ YI MMGS GL +AS IAIL+ANY+AKRL+ +YP+LF+  NG VAHE I+DLR LK+  GIE EDVAKRLMDYGFH
Sbjct:  738 LPGHSIIKCGGEKA------ISAVSAAPFGSAGILPISWMYIRMMGSDGLRKASSIAILSANYLAKRLDPYYPVLFKDPNGLVAHECILDLRPLKSQLGIEVEDVAKRLMDYGFH 846          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_TERTT (Glycine dehydrogenase [decarboxylating] OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.293e-31
Identity = 66/115 (57.39%), Postives = 85/115 (73.91%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            L +HP+    G  A       GT++AAPWGSA ILPIS+ YI MMG+KG+  AS+ AILNANY+AKRL+ H+PIL+ G +G VAHE ++DLR LK  +G+  ED+AKRLMD+GFH
Sbjct:  735 LAAHPLQEIPGTVAAN-----GTVSAAPWGSASILPISWMYIRMMGAKGMKMASEYAILNANYIAKRLKNHFPILYSGKHGFVAHECLLDLRPLKEASGVSEEDIAKRLMDFGFH 844          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIN (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.293e-31
Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP H +V+             G ++AAPWGSA I+ IS+ YIA+MGS+GLT A++ +ILNANY+AKRLEK YP+L++G NG VAHE I+DLR  K +AGIE EDVAKRL+DYGFH
Sbjct:  739 LPGHVLVNNA------TGNEHGAVSAAPWGSASIVLISWVYIALMGSEGLTNATRNSILNANYIAKRLEKVYPVLYKGKNGFVAHECILDLRPFKKSAGIEVEDVAKRLIDYGFH 847          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_SACD2 (Glycine dehydrogenase [decarboxylating] OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.689e-31
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            L  HPV      P P      GTI+AAPWGSA IL IS+ YI MMG++G+  A++ AILNANY+A RL+ HYPIL++G NG +AHE ++DLR LK ++GI  ED+AKRLMD+GFH
Sbjct:  736 LAGHPVQ-----PVPNTLVENGTISAAPWGSASILTISWMYIRMMGAEGMKRATEFAILNANYIAHRLQDHYPILYKGKNGYIAHECLLDLRPLKESSGITEEDIAKRLMDFGFH 845          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIC (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.689e-31
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            G ++AAPWGSA I+ IS+ YIA+MGS+GLT A++ +ILNANY+AKRLEK YP+L++G NG VAHE I+DLR  K +AGIE EDVAKRL+DYGFH
Sbjct:  754 GAVSAAPWGSASIVLISWVYIALMGSEGLTNATRNSILNANYIAKRLEKVYPVLYKGKNGFVAHECILDLRPFKKSAGIEVEDVAKRLIDYGFH 847          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_PHOPR (Glycine dehydrogenase [decarboxylating] OS=Photobacterium profundum GN=gcvP PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.913e-31
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 1
Query:   70 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            ++AA  GSA ILPISY YIAMMG +GLTEA+K+AILNANY+ +RL  HYP+L+RG  G +AHE I+D+R LK  +GI  EDVAKRLMDYGFH
Sbjct:  749 VSAAELGSASILPISYAYIAMMGEEGLTEATKLAILNANYVMERLRPHYPVLYRGTEGRIAHECIIDIRPLKEASGISEEDVAKRLMDYGFH 840          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_LEPBL (Glycine dehydrogenase [decarboxylating] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gcvP PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.913e-31
Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            G ++AAPWGSA I+ IS+ YIA+MGS+GLT A++I+ILNANY+AKRLEK YP+L++G NG VAHE I+D+R  K +A IE EDVAKRL+DYGFH
Sbjct:  754 GAVSAAPWGSASIVLISWIYIALMGSEGLTNATRISILNANYIAKRLEKAYPVLYKGKNGFVAHECILDVRPFKKSAEIEVEDVAKRLIDYGFH 847          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_LEPBJ (Glycine dehydrogenase [decarboxylating] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gcvP PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.913e-31
Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            G ++AAPWGSA I+ IS+ YIA+MGS+GLT A++I+ILNANY+AKRLEK YP+L++G NG VAHE I+D+R  K +A IE EDVAKRL+DYGFH
Sbjct:  754 GAVSAAPWGSASIVLISWIYIALMGSEGLTNATRISILNANYIAKRLEKAYPVLYKGKNGFVAHECILDVRPFKKSAEIEVEDVAKRLIDYGFH 847          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_BURCM (Glycine dehydrogenase [decarboxylating] OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=gcvP PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.913e-31
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVAKRLMDYGFH
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKETSGISVDDVAKRLMDYGFH 858          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_BURCJ (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gcvP PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.913e-31
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVAKRLMDYGFH
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKETSGISVDDVAKRLMDYGFH 858          
The following BLAST results are available for this feature:
BLAST of FC868581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
GCSP_PROM12.605e-3260.87Glycine dehydrogenase [decarboxylating] OS=Prochlo... [more]
GCSP_TERTT1.293e-3157.39Glycine dehydrogenase [decarboxylating] OS=Teredin... [more]
GCSP_LEPIN1.293e-3159.13Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_SACD21.689e-3157.39Glycine dehydrogenase [decarboxylating] OS=Sacchar... [more]
GCSP_LEPIC1.689e-3168.09Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_PHOPR4.913e-3167.39Glycine dehydrogenase [decarboxylating] OS=Photoba... [more]
GCSP_LEPBL4.913e-3167.02Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_LEPBJ4.913e-3167.02Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_BURCM4.913e-3166.32Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCJ4.913e-3166.32Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionC31002B11EF AbioticL1 Citrus clementina cDNA clone C31002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868581 ID=FC868581; Name=FC868581; organism=Citrus clementina; type=EST; length=345bp
CTGCCCTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCAT
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