FC868581

Overview
NameFC868581
Unique NameFC868581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig683 contig Ccv1_Contig683:16..360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSPB_PELPB (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.634e-11
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:   85 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +G+  +L  +YTYI M+G  GL   S+ AI+NANY+   L + Y + +      V HEF +     K   G++  D+AKRL+DYGFH
Sbjct:  324 YGNFAVLVRAYTYIRMLGPDGLRRVSENAIINANYLLSLLLESYDLPY---PKPVMHEFCLSGDRQKKAHGVKTLDIAKRLLDYGFH 407
[Close]
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSPB_BACSK (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Bacillus clausii (strain KSM-K16) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.634e-11
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPW-GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP   +V+  G    +  +P       P+ G+  I   +YTYI  MG  GL + S+ A+LNANYM +RLE +Y + +        HEF++  +  K   G+   D+AKRL+D+G+H
Sbjct:  300 LPKPVLVNDDGFFRFDSDRPQSIGRVKPYYGNYGINLRAYTYIRTMGPDGLRQVSENAVLNANYMMRRLESYYDLPYA---QHCKHEFVLSGKRQKK-LGVRTLDIAKRLLDFGYH 411
The following BLAST results are available for this feature:
BLAST of FC868581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
GCSPB_PELPB9.634e-1140.23Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_BACSK9.634e-1135.34Probable glycine dehydrogenase [decarboxylating] s... [more]

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Properties
Property NameValue
Genbank descriptionC31002B11EF AbioticL1 Citrus clementina cDNA clone C31002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868581 ID=FC868581; Name=FC868581; organism=Citrus clementina; type=EST; length=345bp
CTGCCCTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCAT
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