FC868581

Overview
NameFC868581
Unique NameFC868581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_VIBPA (Glycine dehydrogenase [decarboxylating] OS=Vibrio parahaemolyticus GN=gcvP PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.095e-30
Identity = 60/92 (65.22%), Postives = 74/92 (80.43%), Query Frame = 1
Query:   70 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            ++AA +GSA ILPIS+ YIAMMG  GL+ A+K+AILNANY+ +RL  HYP+L+RG NG VAHE I+D+R LK   GI  ED+AKRLMDYGFH
Sbjct:  745 VSAADFGSASILPISWAYIAMMGEAGLSNATKVAILNANYVMERLRPHYPVLYRGKNGRVAHECIIDIRPLKEETGISEEDIAKRLMDYGFH 836          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_VIBHB (Glycine dehydrogenase [decarboxylating] OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.095e-30
Identity = 60/92 (65.22%), Postives = 74/92 (80.43%), Query Frame = 1
Query:   70 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            ++AA  GSA ILPIS+ YIAMMG  GLT+A+K+AILNANY+ ++L  HYP+L+RG NG VAHE I+D+R LK   GI  ED+AKRLMDYGFH
Sbjct:  745 VSAADMGSASILPISWAYIAMMGEAGLTDATKVAILNANYVMEQLRPHYPVLYRGSNGRVAHECIIDIRPLKEETGISEEDIAKRLMDYGFH 836          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_RHOP5 (Glycine dehydrogenase [decarboxylating] OS=Rhodopseudomonas palustris (strain BisA53) GN=gcvP PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.095e-30
Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEK-SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HP     G   P+  S   GT+AAAPWGSA +L ISY YI +MG  GL  A+++AILNANY+A +L+ H+P+L++   G VAHE IVD R LKN++G+  +D+AKRL+DYGFH
Sbjct:  728 LPGHPCCDDTG---PDGFSHGGGTVAAAPWGSASVLTISYVYILLMGGDGLKRATEVAILNANYVAAKLDPHFPVLYKNERGRVAHECIVDPRALKNSSGVTVDDIAKRLIDYGFH 840          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_DICDI (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Dictyostelium discoideum GN=gcvP PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.095e-30
Identity = 63/115 (54.78%), Postives = 81/115 (70.43%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP H VV   G       + +  ++A PWGS+ ILPI+Y Y+ +MG +GL +A+++AILNANYMA RL+ HY IL+ G +G VAHEFI+DLR  K +AGIE EDVAKRL D  FH
Sbjct:  768 LPGHSVVKGVG-----GERAMSAVSAGPWGSSSILPITYVYLKLMGGQGLKKATQVAILNANYMASRLKDHYKILYTGSHGLVAHEFIIDLRMFKESAGIEAEDVAKRLQDMNFH 877          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_PSESM (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. tomato GN=gcvP PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.266e-30
Identity = 58/94 (61.70%), Postives = 79/94 (84.04%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            G + AAP+GSA ILPI++ YI MMG +GL  AS++AILNANY+++RLE+HYP+L+ G NG VAHE I+DLR +K+++GI  +DVAKRL+D+GFH
Sbjct:  743 GAVCAAPFGSASILPITWMYIRMMGGEGLKRASQLAILNANYISRRLEEHYPVLYTGTNGLVAHECILDLRPIKDSSGISVDDVAKRLIDFGFH 836          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_PSE14 (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gcvP PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.266e-30
Identity = 58/94 (61.70%), Postives = 79/94 (84.04%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            G + AAP+GSA ILPI++ YI MMG +GL  AS++AILNANY+++RLE+HYP+L+ G NG VAHE I+DLR +K+++GI  +DVAKRL+D+GFH
Sbjct:  743 GAVCAAPFGSASILPITWMYIRMMGGEGLKRASQLAILNANYISRRLEEHYPVLYTGTNGLVAHECILDLRPIKDSSGISVDDVAKRLIDFGFH 836          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEF5 (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.266e-30
Identity = 59/94 (62.77%), Postives = 79/94 (84.04%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            G + AAP+GSA ILPI++ YI+MMG  GL  AS++AILNANY+++RLE+HYP+L+ G NG VAHE I+DLR LK+++GI  +DVAKRL+D+GFH
Sbjct:  740 GAVCAAPFGSASILPITWMYISMMGGAGLKRASQLAILNANYISRRLEEHYPVLYTGSNGLVAHECILDLRPLKDSSGISVDDVAKRLIDFGFH 833          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_SYNPX (Glycine dehydrogenase [decarboxylating] OS=Synechococcus sp. (strain WH8102) GN=gcvP PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.210e-29
Identity = 62/115 (53.91%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HP+ ++         Q +G ++AA  GSA ILPIS+ Y+ MMG++ L +A+ +A+L+ANY+A RL+ HYP+LFRG  G VAHE I+DLR LK  AGI+ +D+AKRLMDYGFH
Sbjct:  730 LPGHPMQAS-------PDQAIGPVSAAALGSASILPISWMYLRMMGAEALRQATAVALLSANYLALRLDPHYPVLFRGATGRVAHECILDLRPLKRDAGIDVDDIAKRLMDYGFH 837          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_RALEJ (Glycine dehydrogenase [decarboxylating] OS=Ralstonia eutropha (strain JMP134) GN=gcvP PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.210e-29
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +G ++AAP+GSA ILPIS+ YIAMMGS GLT A++ AIL ANY+AKRL  HYP+L+ G +G VAHE I+DLR L+   GI  EDVAKRLMDYGFH
Sbjct:  763 IGGVSAAPFGSASILPISWMYIAMMGSAGLTAATENAILTANYVAKRLSPHYPVLYTGQHGLVAHECILDLRPLQKETGISNEDVAKRLMDYGFH 857          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_BRASO (Glycine dehydrogenase [decarboxylating] OS=Bradyrhizobium sp. (strain ORS278) GN=gcvP PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.210e-29
Identity = 62/115 (53.91%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HP  +T G    + + P+G ++AAP+GSA IL ISY Y+ +MG +GLT A++IAILNANY+A RL+ H+P+L+R   G +AHE I+D R LK T+G+  +D+AKRL+DYGFH
Sbjct:  728 LPGHP--ATDG----KTAHPVGPVSAAPYGSASILTISYIYMLLMGGEGLTRATEIAILNANYVAARLDAHFPVLYRNERGRIAHECIIDPRLLKQTSGVTVDDIAKRLIDYGFH 836          
The following BLAST results are available for this feature:
BLAST of FC868581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
GCSP_VIBPA7.095e-3065.22Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_VIBHB7.095e-3065.22Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_RHOP57.095e-3054.31Glycine dehydrogenase [decarboxylating] OS=Rhodops... [more]
GCSP_DICDI7.095e-3054.78Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PSESM9.266e-3061.70Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_PSE149.266e-3061.70Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP1_PSEF59.266e-3062.77Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP_SYNPX1.210e-2953.91Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_RALEJ1.210e-2966.32Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_BRASO1.210e-2953.91Glycine dehydrogenase [decarboxylating] OS=Bradyrh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31002B11EF AbioticL1 Citrus clementina cDNA clone C31002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868581 ID=FC868581; Name=FC868581; organism=Citrus clementina; type=EST; length=345bp
CTGCCCTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCAT
back to top