FC868581

Overview
NameFC868581
Unique NameFC868581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig683 contig Ccv1_Contig683:16..360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_PSEU2 (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.581e-29
Identity = 58/94 (61.70%), Postives = 79/94 (84.04%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            G + AAP+GSA ILPI++ YI MMG +GL  AS++AILNANY+++RLE+HYP+L+ G NG VAHE I+DLR +K+++GI  +DVAKRL+D+GFH
Sbjct:  743 GAVCAAPFGSASILPITWMYIRMMGGEGLKRASQLAILNANYISRRLEEHYPVLYTGSNGLVAHECILDLRPIKDSSGISVDDVAKRLIDFGFH 836          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_BURXL (Glycine dehydrogenase [decarboxylating] OS=Burkholderia xenovorans (strain LB400) GN=gcvP PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.581e-29
Identity = 64/109 (58.72%), Postives = 82/109 (75.23%), Query Frame = 1
Query:   19 VSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +S+G   AP     +G ++ AP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AK+L  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVAKRL DYGFH
Sbjct:  756 ISSGYERAPNG---IGAVSGAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYVAKKLAPHYPVLYSGPGGLVAHECILDLRPIKETSGITVDDVAKRLADYGFH 861          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_BURPP (Glycine dehydrogenase [decarboxylating] OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=gcvP PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.581e-29
Identity = 64/109 (58.72%), Postives = 82/109 (75.23%), Query Frame = 1
Query:   19 VSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +S+G   AP     +G ++ AP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AK+L  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVAKRL DYGFH
Sbjct:  756 ISSGYERAPNG---IGAVSGAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYVAKKLAPHYPVLYSGPGGLVAHECILDLRPIKETSGITVDDVAKRLADYGFH 861          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_BRASB (Glycine dehydrogenase [decarboxylating] OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=gcvP PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.581e-29
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HP              P+G ++AAP+GSA IL ISY Y+ +MG +GLT A++IAILNANY+A RL+ H+P+L+R   G VAHE I+D R LK T G+  +D+AKRL+DYGFH
Sbjct:  728 LPGHPATDAA------TPSPVGPVSAAPYGSASILTISYIYMLLMGGEGLTRATEIAILNANYVAARLDPHFPVLYRNERGRVAHECIIDPRPLKQTCGVTVDDIAKRLIDYGFH 836          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEPF (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.581e-29
Identity = 59/94 (62.77%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   64 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            G + AAP+GSA ILPI++ YI MMG  GL  AS++AILNANY+++RLE+HYP+L+ G NG VAHE I+DLR LK+++GI  +DVAKRL+D+GFH
Sbjct:  741 GAVCAAPFGSASILPITWMYIRMMGGAGLKRASQLAILNANYISRRLEEHYPVLYTGSNGLVAHECILDLRPLKDSSGISVDDVAKRLIDFGFH 834          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_NITWN (Glycine dehydrogenase [decarboxylating] OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=gcvP PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.064e-29
Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HP +      A      +G ++AAP+GSA IL ISY YI MMGS+GL  A+++AILNANY+A+RL+ H+P+L+R V G VAHE I+D R LK   G+  +D+AKRL+DYGFH
Sbjct:  725 LPGHPAIDDATPSA------VGPVSAAPFGSASILTISYIYILMMGSEGLKRATEVAILNANYIAQRLDPHFPVLYRNVKGRVAHECIIDPRALKAKTGVTVDDIAKRLIDYGFH 833          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP2_COLP3 (Glycine dehydrogenase [decarboxylating] 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.064e-29
Identity = 64/115 (55.65%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP H V +T           +G ++A   GSA ILPIS+ YIA+MG++GL  A+++AILNANY+ ++L  HYPILFRG  G VAHE I+DLR LK ++GI  EDVAKRLMD+GFH
Sbjct:  732 LPGHSVTNT-----------VGAVSATALGSASILPISWAYIALMGAEGLKSATELAILNANYIMEKLSPHYPILFRGKQGRVAHECIIDLRPLKESSGISEEDVAKRLMDFGFH 835          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_RALSO (Glycine dehydrogenase [decarboxylating] OS=Ralstonia solanacearum GN=gcvP PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.696e-29
Identity = 59/100 (59.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:   46 EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            + SQ +G ++AAP+GSA ILPIS+ YIAMMG+ GLT A++ AIL+ANY+A+RL  +YP+L+ G +G VAHE I+D+R L+  +GI  ED+AKRLMD+GFH
Sbjct:  764 DASQNIGAVSAAPFGSASILPISWMYIAMMGAAGLTAATEAAILSANYVARRLSPYYPVLYTGAHGLVAHECILDIRPLQKESGISNEDIAKRLMDFGFH 863          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_IDILO (Glycine dehydrogenase [decarboxylating] OS=Idiomarina loihiensis GN=gcvP PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.696e-29
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP+H +V+  G  A       G ++AA +GSA IL IS+ YIAMMG +GL EAS+ AILNANY+A++L KH+ IL+RG N  VAHE I+DLR +K+ AGI   DVAKRL DYGFH
Sbjct:  736 LPNHSIVNIDGPKAGN-----GAVSAAQFGSASILTISWMYIAMMGGRGLREASETAILNANYLAEKLSKHFKILYRGRNNRVAHECIIDLRPMKDAAGIAEIDVAKRLQDYGFH 845          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_RHOPA (Glycine dehydrogenase [decarboxylating] OS=Rhodopseudomonas palustris GN=gcvP PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.521e-29
Identity = 63/115 (54.78%), Postives = 79/115 (68.70%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HP     G P        GT++AAPWGSA IL ISY YI MMG+ GL  A++IAILNANY+A +L  H+P+L+R   G VAHE I+D R LK + G+  +D+AKRL+DYGFH
Sbjct:  752 LPGHPAE---GEPLNGGLHGGGTVSAAPWGSASILTISYIYILMMGAAGLKRATEIAILNANYIAAKLHPHFPVLYRNPRGRVAHECIIDPRALKTSTGVTVDDIAKRLIDYGFH 863          
The following BLAST results are available for this feature:
BLAST of FC868581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
GCSP_PSEU21.581e-2961.70Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_BURXL1.581e-2958.72Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURPP1.581e-2958.72Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BRASB1.581e-2953.04Glycine dehydrogenase [decarboxylating] OS=Bradyrh... [more]
GCSP1_PSEPF1.581e-2962.77Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP_NITWN2.064e-2953.91Glycine dehydrogenase [decarboxylating] OS=Nitroba... [more]
GCSP2_COLP32.064e-2955.65Glycine dehydrogenase [decarboxylating] 2 OS=Colwe... [more]
GCSP_RALSO2.696e-2959.00Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_IDILO2.696e-2957.39Glycine dehydrogenase [decarboxylating] OS=Idiomar... [more]
GCSP_RHOPA3.521e-2954.78Glycine dehydrogenase [decarboxylating] OS=Rhodops... [more]

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Properties
Property NameValue
Genbank descriptionC31002B11EF AbioticL1 Citrus clementina cDNA clone C31002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868581 ID=FC868581; Name=FC868581; organism=Citrus clementina; type=EST; length=345bp
CTGCCCTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCAT
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