FC868581

Overview
NameFC868581
Unique NameFC868581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig683 contig Ccv1_Contig683:16..360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_PECCP (Glycine dehydrogenase [decarboxylating] OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.521e-29
Identity = 62/115 (53.91%), Postives = 85/115 (73.91%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL++ YP+L+ G +G VAHE I+D+R LK + GI   D+AKRL+DYGFH
Sbjct:  734 VPGHQVVKIDGVLTEQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKQASQMAILNANYIATRLQQAYPVLYTGRDGRVAHECILDIRPLKESTGISEMDIAKRLIDYGFH 843          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_ERWCT (Glycine dehydrogenase [decarboxylating] OS=Erwinia carotovora subsp. atroseptica GN=gcvP PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.521e-29
Identity = 62/115 (53.91%), Postives = 85/115 (73.91%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL +AS++AILNANY+A RL++ YP+L+ G +G VAHE I+D+R LK + GI   D+AKRL+DYGFH
Sbjct:  734 VPGHQVVKIDGVLTEQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLKQASQMAILNANYIATRLQQAYPVLYTGRDGRVAHECILDIRPLKESTGISEMDIAKRLIDYGFH 843          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_CHRVO (Glycine dehydrogenase [decarboxylating] OS=Chromobacterium violaceum GN=gcvP PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.599e-29
Identity = 59/103 (57.28%), Postives = 79/103 (76.70%), Query Frame = 1
Query:   37 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            P P   +    ++AAP+GSA ILPISY YIAMMG++G+ +A++ A+L+ANY+A RL +H+P+L+ G NG VAHE I+DLR LK  +G+   DVAKRLMDYGFH
Sbjct:  732 PVPGAVEGQTAVSAAPFGSASILPISYMYIAMMGAEGMKQATENALLSANYLATRLSEHFPVLYTGANGRVAHECIIDLRPLKAASGVTEVDVAKRLMDYGFH 834          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_SCHPO (Putative glycine dehydrogenase [decarboxylating], mitochondrial OS=Schizosaccharomyces pombe GN=SPAC13G6.06c PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 62/115 (53.91%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LPSHPVVS GG         + +++++P+GSA ILPIS+ Y+ MMG  GL +ASK A+LNANYMAKRL  HY +++   N   AHEFI+D R  K TAG++  D+AKRL DY FH
Sbjct:  795 LPSHPVVSCGG------KNGITSVSSSPFGSAGILPISWAYMRMMGLAGLRDASKAALLNANYMAKRLSSHYKLVYTNKNNLCAHEFILDAREFKATAGVDATDIAKRLQDYSFH 903          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_RALME (Glycine dehydrogenase [decarboxylating] OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gcvP PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 61/95 (64.21%), Postives = 76/95 (80.00%), Query Frame = 1
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +G ++AAP+GSA ILPIS+ YIAMMGS GLT A++ AIL ANY+A+RL  H+P+L+ G +G VAHE I+DLR L+   GI  EDVAKRLMDYGFH
Sbjct:  761 IGGVSAAPFGSASILPISWMYIAMMGSAGLTAATENAILTANYVARRLSPHFPVLYTGQHGLVAHECILDLRPLQKATGISNEDVAKRLMDYGFH 855          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_EDWI9 (Glycine dehydrogenase [decarboxylating] OS=Edwardsiella ictaluri (strain 93-146) GN=gcvP PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 64/115 (55.65%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +P H VV   G+   +     G ++AAP+GSA ILPIS+ YI MMG++GL  AS +AILNANY+A+RL   YP+L+RG  G VAHE I+DLR LK  +GI   D+AKRL+DYGFH
Sbjct:  735 VPGHRVVQLAGLTTRQ-----GAVSAAPFGSASILPISWMYIRMMGAEGLRRASTVAILNANYIARRLGAVYPVLYRGKEGYVAHECILDLRPLKARSGISEMDIAKRLIDYGFH 844          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_DEIRA (Glycine dehydrogenase [decarboxylating] OS=Deinococcus radiodurans GN=gcvP PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 60/115 (52.17%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP+H V       AP      G ++AAP+GSA ILPISY YI ++G+ GL +++++A+LNANY+AKRL   +P+L+ G  G VAHE I+D+R LK  +G+  ED+AKRLMDYGFH
Sbjct:  723 LPNHAV-------APTSDSHTGAVSAAPYGSASILPISYLYIKLLGAAGLRQSTQVALLNANYIAKRLSGAFPVLYSGKGGRVAHECILDIRPLKQESGVSEEDIAKRLMDYGFH 830          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP2_PSEF5 (Glycine dehydrogenase [decarboxylating] 2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gcvP2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    7 SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            +HPVV   G P PE     G ++AAPWGSA ILPIS+ YIA+MG + L +AS++AIL ANY+A++L   +P+L+ G NG VAHE I+DLR LK   GI  EDVAKRLMDYGFH
Sbjct:  732 NHPVVPIDG-PLPEN----GAVSAAPWGSASILPISWMYIALMGPQ-LADASEVAILAANYLAEQLSGAFPVLYSGRNGRVAHECILDLRPLKAQTGISEEDVAKRLMDYGFH 838          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_SYNS9 (Glycine dehydrogenase [decarboxylating] OS=Synechococcus sp. (strain CC9902) GN=gcvP PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.844e-29
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            LP HP  +       + +  +G ++AA  GSA ILPIS+ Y+ MMG+  L +AS +A+L+ANY+A RL+ H+P+LFRG  G VAHE I+DLR LK  AGI+ +D+AKRLMDYGFH
Sbjct:  731 LPGHPFEN-------QTASAIGPVSAAALGSASILPISWMYLRMMGADALRQASAVALLSANYLAHRLDDHFPVLFRGATGRVAHECILDLRPLKRDAGIDVDDIAKRLMDYGFH 838          
BLAST of FC868581 vs. ExPASy Swiss-Prot
Match: GCSP_PSYIN (Glycine dehydrogenase [decarboxylating] OS=Psychromonas ingrahamii (strain 37) GN=gcvP PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.844e-29
Identity = 60/92 (65.22%), Postives = 74/92 (80.43%), Query Frame = 1
Query:   70 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 345
            ++AA  GSA ILPISY YIAMMG +GLT A++IAILNANY+ +RL  HYPIL++G  G VAHE I+D+R L+  +GI  ED+AKRLMDYGFH
Sbjct:  756 VSAAELGSASILPISYAYIAMMGEQGLTSATQIAILNANYIMERLRPHYPILYQGKEGRVAHECIIDIRPLEAASGISNEDIAKRLMDYGFH 847          
The following BLAST results are available for this feature:
BLAST of FC868581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 282
Match NameE-valueIdentityDescription
GCSP_PECCP3.521e-2953.91Glycine dehydrogenase [decarboxylating] OS=Pectoba... [more]
GCSP_ERWCT3.521e-2953.91Glycine dehydrogenase [decarboxylating] OS=Erwinia... [more]
GCSP_CHRVO4.599e-2957.28Glycine dehydrogenase [decarboxylating] OS=Chromob... [more]
GCSP_SCHPO6.006e-2953.91Putative glycine dehydrogenase [decarboxylating], ... [more]
GCSP_RALME6.006e-2964.21Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_EDWI96.006e-2955.65Glycine dehydrogenase [decarboxylating] OS=Edwards... [more]
GCSP_DEIRA6.006e-2952.17Glycine dehydrogenase [decarboxylating] OS=Deinoco... [more]
GCSP2_PSEF56.006e-2959.29Glycine dehydrogenase [decarboxylating] 2 OS=Pseud... [more]
GCSP_SYNS97.844e-2953.04Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_PSYIN7.844e-2965.22Glycine dehydrogenase [decarboxylating] OS=Psychro... [more]

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Properties
Property NameValue
Genbank descriptionC31002B11EF AbioticL1 Citrus clementina cDNA clone C31002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868581 ID=FC868581; Name=FC868581; organism=Citrus clementina; type=EST; length=345bp
CTGCCCTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCAT
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