FC868583

Overview
NameFC868583
Unique NameFC868583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RASH_MOUSE (GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 60/163 (36.81%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            +KL+++G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L   DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL  + V S + A+  A   GIP++ETSAK    VE AF  +  +I+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDYLDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 57/163 (34.97%), Postives = 93/163 (57.06%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            +KL+++G  GVGKS L ++   + ++D Y  TI   ++ + V  D +T  L I DTAGQE +  +   Y R   G + VY +T + S++ +  +  +I R   ++ V  +LVGNK DL  ++ VS    +  A     PFME+SAK  +NVE+AF ++  +I+
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVSIDDETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNEGQELAKGFNCPFMESSAKSRINVEEAFYSLVREIR 165          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAS3_RHIRA (Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 56/163 (34.36%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            +K++++G  GVGKS L ++F    ++D Y  TI   ++ + V  D +T  L + DTAGQE +  +   Y R   G ++VY +T + SF  V  +  +I R    ++   +LVGNKCDL   + VS +  +  A   G PF ETSAK  + V+  F  +  +I+
Sbjct:   10 YKIVIVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCVIDD-ETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIRRVKDRDSFPMVLVGNKCDLEGDRQVSSQEGRDLAKSFGCPFSETSAKQRIRVDDTFYEVVREIR 171          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: DJC27_DANRE (DnaJ homolog subfamily C member 27 OS=Danio rerio GN=dnajc27 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.451e-23
Identity = 50/165 (30.30%), Postives = 97/165 (58.79%), Query Frame = 2
Query:  194 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-----ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 673
            K++ +G++ VGKSC++ R+ +  ++  Y++TIG+D+ +  V+   + +K+ I+D AG   F  + + +Y+ + G+I+VYDV  +ESF+ +  WL E+ +        EN+  ++  NK DLT ++VV     + +A+  G  + ETSA+    + + F +  + I
Sbjct:   18 KVISLGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDSQGVILVYDVGLRESFDALDSWLTEMKQEMGSQANMENIIFVVCANKVDLTKRRVVDESEGRLWAESRGFHYFETSAQSGEGINEMFQSFFSSI 182          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RASN_XENLA (GTPase NRas OS=Xenopus laevis GN=nras PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 60/162 (37.04%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 673
            +KL+++G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A+  A   GIPF+ETSAK    VE AF  +  +I
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINAYREQIKRVKDSDDVPMVLVGNKCDL-PSRTVDTKQAQELARSYGIPFIETSAKTRQGVEDAFYTLVREI 163          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RASH_RRASV (Transforming protein p29 OS=Rasheed rat sarcoma virus GN=RAS PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 61/163 (37.42%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            +KL+++G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL    V S + A+  A   GIP++ETSAK    VE AF  +  +I+
Sbjct:   63 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAHTVESRQ-AQDLARSYGIPYIETSAKTRPGVEDAFYTLVREIR 223          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RSR1_CANAL (Ras-related protein RSR1 OS=Candida albicans GN=RSR1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 59/163 (36.20%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSMNVEQAFMAMTADI 673
            +K++++G  GVGKS + ++F    Y++SY  TI   ++ + +E DG+   L+I DTAG  +F  +   Y +   G ++VY VTD+ S   +     ++ R   S+NV  +LVGNKCDL D +V+S E     + + G +PF ETSA    NV++AF+ +   I
Sbjct:    4 YKVVVLGAGGVGKSSITVQFVQGVYVESYDPTIEDSYR-KQIEVDGRACDLEILDTAGVAQFTAMRELYIKSGKGFLLVYSVTDENSLKELLALREQVLRIKDSDNVPMVLVGNKCDLEDDRVLSIEDGVKVSQDWGLVPFYETSAMYKTNVDEAFIDVVRQI 165          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RASN_RAT (GTPase NRas OS=Rattus norvegicus GN=Nras PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 60/163 (36.81%), Postives = 93/163 (57.06%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            +KL+++G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RASN_PIG (GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 60/163 (36.81%), Postives = 93/163 (57.06%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            +KL+++G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RASN_MOUSE (GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 60/163 (36.81%), Postives = 93/163 (57.06%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            +KL+++G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
The following BLAST results are available for this feature:
BLAST of FC868583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASH_MOUSE5.451e-2336.81GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1[more]
RASD_DICDI5.451e-2334.97Ras-like protein rasD OS=Dictyostelium discoideum ... [more]
RAS3_RHIRA5.451e-2334.36Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3... [more]
DJC27_DANRE5.451e-2330.30DnaJ homolog subfamily C member 27 OS=Danio rerio ... [more]
RASN_XENLA7.120e-2337.04GTPase NRas OS=Xenopus laevis GN=nras PE=2 SV=1[more]
RASH_RRASV7.120e-2337.42Transforming protein p29 OS=Rasheed rat sarcoma vi... [more]
RSR1_CANAL9.299e-2336.20Ras-related protein RSR1 OS=Candida albicans GN=RS... [more]
RASN_RAT9.299e-2336.81GTPase NRas OS=Rattus norvegicus GN=Nras PE=2 SV=1[more]
RASN_PIG9.299e-2336.81GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1[more]
RASN_MOUSE9.299e-2336.81GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31002C01EF AbioticL1 Citrus clementina cDNA clone C31002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868583 ID=FC868583; Name=FC868583; organism=Citrus clementina; type=EST; length=689bp
AAGCTGTCCCACTTTTCGGTTTCATCATCATCATCGACATTTTGCTTTCT
TCGTCAAATTCTCTCTCAATCTCACCTCCTTAGCTTGTCTGTGCCAAACT
CCCGGTCCAATCTCCAGCTGGACCGGTTCGATTCTGCGCGAACCCCCTCA
ACATCTTATTGCAGTCATGAATCCTGAATATGACTACTTGTTCAAGCTTT
TGCTGATTGGAGACTCTGGAGTTGGCAAATCGTGTCTTCTTCTGAGATTT
GCTGATGATTCGTACCTGGACAGTTACATTAGCACTATTGGGGTTGACTT
TAAAATTCGCACAGTGGAGCAAGACGGGAAGACTGTAAAACTCCAAATTT
GGGACACTGCAGGGCAAGAACGATTCAGGACAATCACTAGCAGCTACTAC
CGTGGAGCACATGGCATTATCATTGTTTATGATGTTACAGACCAAGAGAG
CTTCAACAACGTTAAGCAGTGGTTGAATGAAATTGATCGCTATGCAAGTG
AAAATGTAAACAAGCTTCTGGTTGGAAACAAGTGTGATCTCACTGATAAG
AAGGTTGTCTCTTATGAAACAGCGAAGGCATTTGCTGATGAAATTGGCAT
CCCGTTCATGGAGACCAGCGCAAAGGATTCTATGAACGTGGAACAAGCTT
TTATGGCTATGACTGCTGACATTAAGACAGGATGGCAAG
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