FC868583

Overview
NameFC868583
Unique NameFC868583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAP1A_BOVIN (Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 58/163 (35.58%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADI 673
            +KL+++G  GVGKS L ++F    +++ Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 56/163 (34.36%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  188 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL--TDKKVVS---YETAKAFADE---IGIPFMETSAKDSMNVEQAF 652
            + K++ +GDS VGK+ L   + +  Y  +   +IG D+ I+ ++ + K V L +WDT GQERF+  +  Y+RGA+   + +D+ ++ESF N+ +W++EI +Y   N+  +LVG K D+  TDK +      +  K   D+     + + ETSAK S NV + +
Sbjct:    7 MLKIITLGDSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEIIKYCYGNIPFVLVGTKSDIPRTDKSISKARIEQWCKNIEDQGIIDKVHYFETSAKLSQNVTELY 169          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB24_MOUSE (Ras-related protein Rab-24 OS=Mus musculus GN=Rab24 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 58/164 (35.37%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  194 KLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD----KKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTAD 670
            K++++G   VGK+ L+ R+  D +L   Y +TIG  F  + +    +TV L IWDTAG ER+  ++  YYRGA   I+ YD+TD  SF   K W+ E+ R   E     L G K DL +    ++ V +   + +AD I     ETS+K   +V++ F  +  D
Sbjct:    9 KVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMCVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL-RSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAED 171          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAP1B_RAT (Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21
Identity = 57/163 (34.97%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADI 673
            +KL+++G  GVGKS L ++F    +++ Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAPA_DISOM (Ras-related protein O-Krev OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 58/163 (35.58%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADI 673
            +KL+++G  GVGKS L ++F    +++ Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQPCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAP1B_PONAB (Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 57/163 (34.97%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADI 673
            +KL+++G  GVGKS L ++F    +++ Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAP1B_PANTR (Ras-related protein Rap-1b OS=Pan troglodytes GN=RAP1B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 57/163 (34.97%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADI 673
            +KL+++G  GVGKS L ++F    +++ Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAP1B_MOUSE (Ras-related protein Rap-1b OS=Mus musculus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 57/163 (34.97%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADI 673
            +KL+++G  GVGKS L ++F    +++ Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAP1B_MACFA (Ras-related protein Rap-1b OS=Macaca fascicularis GN=RAP1B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 57/163 (34.97%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADI 673
            +KL+++G  GVGKS L ++F    +++ Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAP1B_HUMAN (Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 57/163 (34.97%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADI 673
            +KL+++G  GVGKS L ++F    +++ Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
The following BLAST results are available for this feature:
BLAST of FC868583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1A_BOVIN1.343e-2135.58Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A ... [more]
RABL_DICDI1.343e-2134.36Ras-related protein RabL OS=Dictyostelium discoide... [more]
RAB24_MOUSE1.343e-2135.37Ras-related protein Rab-24 OS=Mus musculus GN=Rab2... [more]
RAP1B_RAT1.754e-2134.97Ras-related protein Rap-1b OS=Rattus norvegicus GN... [more]
RAPA_DISOM2.290e-2135.58Ras-related protein O-Krev OS=Discopyge ommata PE=... [more]
RAP1B_PONAB2.290e-2134.97Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1... [more]
RAP1B_PANTR2.290e-2134.97Ras-related protein Rap-1b OS=Pan troglodytes GN=R... [more]
RAP1B_MOUSE2.290e-2134.97Ras-related protein Rap-1b OS=Mus musculus GN=Rap1... [more]
RAP1B_MACFA2.290e-2134.97Ras-related protein Rap-1b OS=Macaca fascicularis ... [more]
RAP1B_HUMAN2.290e-2134.97Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31002C01EF AbioticL1 Citrus clementina cDNA clone C31002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868583 ID=FC868583; Name=FC868583; organism=Citrus clementina; type=EST; length=689bp
AAGCTGTCCCACTTTTCGGTTTCATCATCATCATCGACATTTTGCTTTCT
TCGTCAAATTCTCTCTCAATCTCACCTCCTTAGCTTGTCTGTGCCAAACT
CCCGGTCCAATCTCCAGCTGGACCGGTTCGATTCTGCGCGAACCCCCTCA
ACATCTTATTGCAGTCATGAATCCTGAATATGACTACTTGTTCAAGCTTT
TGCTGATTGGAGACTCTGGAGTTGGCAAATCGTGTCTTCTTCTGAGATTT
GCTGATGATTCGTACCTGGACAGTTACATTAGCACTATTGGGGTTGACTT
TAAAATTCGCACAGTGGAGCAAGACGGGAAGACTGTAAAACTCCAAATTT
GGGACACTGCAGGGCAAGAACGATTCAGGACAATCACTAGCAGCTACTAC
CGTGGAGCACATGGCATTATCATTGTTTATGATGTTACAGACCAAGAGAG
CTTCAACAACGTTAAGCAGTGGTTGAATGAAATTGATCGCTATGCAAGTG
AAAATGTAAACAAGCTTCTGGTTGGAAACAAGTGTGATCTCACTGATAAG
AAGGTTGTCTCTTATGAAACAGCGAAGGCATTTGCTGATGAAATTGGCAT
CCCGTTCATGGAGACCAGCGCAAAGGATTCTATGAACGTGGAACAAGCTT
TTATGGCTATGACTGCTGACATTAAGACAGGATGGCAAG
back to top